Basic Information

Insect: Lordithon lunulatus
Gene Symbol: -
Assembly: GCA_963942505.1
Location: OZ012668.1:53318197-53320179[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 6.1 9.8e+02 2.0 0.1 3 23 17 38 15 38 0.90

2 17 5.4e-06 0.00085 21.1 2.2 2 23 65 87 64 87 0.97

3 17 0.014 2.2 10.3 1.2 1 22 95 116 95 118 0.89

4 17 0.0014 0.22 13.5 0.5 3 23 126 146 124 146 0.96

5 17 0.0012 0.19 13.7 0.4 3 23 165 186 163 186 0.96

6 17 0.0017 0.28 13.2 4.5 1 23 194 217 194 217 0.98

7 17 0.42 67 5.6 1.3 2 23 224 245 223 245 0.96

8 17 3.8e-05 0.0061 18.4 0.9 2 23 260 282 259 282 0.94

9 17 1.7e-05 0.0027 19.5 1.5 1 23 345 368 345 368 0.96

10 17 0.00017 0.027 16.4 2.4 1 23 374 397 374 397 0.97

11 17 2.9e-05 0.0045 18.8 2.2 1 23 399 421 399 421 0.99

12 17 0.00083 0.13 14.2 3.8 3 23 465 485 464 485 0.97

13 17 7.2e-05 0.011 17.5 2.2 1 23 491 513 491 513 0.98

14 17 3e-06 0.00047 21.9 1.1 1 23 519 541 519 541 0.96

15 17 3.3e-05 0.0053 18.6 1.0 1 23 548 570 548 570 0.98

16 17 0.18 29 6.8 0.5 3 23 578 596 577 596 0.91

17 17 0.00076 0.12 14.3 3.7 1 21 602 622 602 623 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	6.1	9.8e+02	2.0	0.1	3	23	17	38	15	38	0.90
2	17	5.4e-06	0.00085	21.1	2.2	2	23	65	87	64	87	0.97
3	17	0.014	2.2	10.3	1.2	1	22	95	116	95	118	0.89
4	17	0.0014	0.22	13.5	0.5	3	23	126	146	124	146	0.96
5	17	0.0012	0.19	13.7	0.4	3	23	165	186	163	186	0.96
6	17	0.0017	0.28	13.2	4.5	1	23	194	217	194	217	0.98
7	17	0.42	67	5.6	1.3	2	23	224	245	223	245	0.96
8	17	3.8e-05	0.0061	18.4	0.9	2	23	260	282	259	282	0.94
9	17	1.7e-05	0.0027	19.5	1.5	1	23	345	368	345	368	0.96
10	17	0.00017	0.027	16.4	2.4	1	23	374	397	374	397	0.97
11	17	2.9e-05	0.0045	18.8	2.2	1	23	399	421	399	421	0.99
12	17	0.00083	0.13	14.2	3.8	3	23	465	485	464	485	0.97
13	17	7.2e-05	0.011	17.5	2.2	1	23	491	513	491	513	0.98
14	17	3e-06	0.00047	21.9	1.1	1	23	519	541	519	541	0.96
15	17	3.3e-05	0.0053	18.6	1.0	1	23	548	570	548	570	0.98
16	17	0.18	29	6.8	0.5	3	23	578	596	577	596	0.91
17	17	0.00076	0.12	14.3	3.7	1	21	602	622	602	623	0.95

Sequence Information

Coding Sequence: ATGACAATATATGATAACCCAGAGAGTACAGCGACAGAAGATACAATATGCGTTATCTGCGAACAGACAAATGTAACACCCACTGATTTATTATACCACCTTGAAGAGTTCCATAAGATACCCTCGgagtatgtaaaaaatataacacgtgaGGAATTAATCGATTTAATCATCATCAATGATGATACCTCAACATGCACGTTCTGCGACCAGAAATTTTCGCGCCGCAGGAGCTTAATCAGACACATAAAGACAATACATAAAATCGAAAACGTTCTTCTCCATAAGTGCTACGAATGCAATATAGCATTTACTACTACAGGCGAGTACGAGTCGCATAACACAAACATACATCCCGGGGAGAACATGATGAATTGCAGAATATGCAACACGTATTTCGCATCGTATATTGCATTAAGGCGACACATCTCTAAACACACAGCTAGTGTTAAAAATGAGAATACAGACAATAATACTAAATATGTTATAGCCTGTTCAATCTGCCAACAAAAGTTTACACGGCGTTTATACCTGATTGGCCATTTAAAACGCATACATAAACTCAATAACATACCAAACTACTATTGTACAGAATGCAACATATCATTCCAACAACACGAAGAATTTAAATCACATAAGAATACGAAGCATTTAGGCCTTGATGTCATCACATGCTATATTTGTAATGCAACTCATAGCACATACGCTGCtttatacaaacattttcaaacaCATACTCAAGAGGATGGAACAAGTAATTCAATAGATTACAGAGTAACTTGTTTGATTTGCCGTCGGAAGTTTACACGAGCTCAGAATTTAATGCGGCATTTGAAAGCCTCACACAAAATTGAGGATGTTCCAGGATACAATTTCAAGAAGCGTAACATTACCTATGGACGCGAGGAAGAATTGTTACCACATAATAATACGGTACATTCCactaataaatTTAAATTAGAAGTTGATAGTGATTTACCAGTTGAAACTAATGAATACCCGATATTGGATGTAAAGGTTGAGAAGGAAACATTTGCATGCAGTGTGTGTAAAATTCGGTTTAAAAACCGTTTTAGTTTGAACACGCATATGAGACAAGCACATAATATAAAAGCTAGATACAGCTGTAACATTTGTGAGAAAAAGTATTTCAGGCTATATAATTTGCGTTTACATAAAATGAGCTCGCATTTTTTCAAATGTGATAGTTGTACCAGATGTTTTCCTACAAATGCAAGTTTATTGGAACACATGCAGAGTCATACCAACAACGTTGTTGATGAAGATAAAACAGACAAAAGTGGTAGTGTTGTCGATACTATTGAAGCATACTCCATACCTTTAATCAGTGAGAGTCCATTGGGAGAcaggaaaagtaaaaaatccaCTCTCTGTCACATTTGCGCTAAAACCTGTGCCACACCATCCGCCCTCAAGAGGCACATTGATCACCACAATAATATCCGTAAACACAAATGTGAAACTTGCGGGTTTCGTTTTACAGCGGCGGTTCAATTAAGAAACCACATGTTCACGCATTCGACTGATCGAACGTTTGCTTGTGAGGTTTGTGGCAAGACGTATCGCACGAAGCAAACGCTGAACTCGCACATGCTTTTCCATGACGATTCCACTTTGAGATTCACTTGCACAATCTGCAACAACAAATATAGGCGAAACGCCGACCTTAAAGCGCACAGCAGAGTGCATACGGGCGAAAGGCCGAAGATATGTAAGGTTTGTGGGGCGGCTTTTTCCAGAGGAATGGCCGAACACATGCGCACCCATAAAGACACCAATCCGTTCAAATGCCACCTTTGTAGTGCCAGTTTTAGTCGACGACGTTTTTTGGAGAGGCATCAGCTGCATTGTAGCGAACGTAGTACTGACACGAGCGTACCAATCAAACGTAATTGA
Protein Sequence: MTIYDNPESTATEDTICVICEQTNVTPTDLLYHLEEFHKIPSEYVKNITREELIDLIIINDDTSTCTFCDQKFSRRRSLIRHIKTIHKIENVLLHKCYECNIAFTTTGEYESHNTNIHPGENMMNCRICNTYFASYIALRRHISKHTASVKNENTDNNTKYVIACSICQQKFTRRLYLIGHLKRIHKLNNIPNYYCTECNISFQQHEEFKSHKNTKHLGLDVITCYICNATHSTYAALYKHFQTHTQEDGTSNSIDYRVTCLICRRKFTRAQNLMRHLKASHKIEDVPGYNFKKRNITYGREEELLPHNNTVHSTNKFKLEVDSDLPVETNEYPILDVKVEKETFACSVCKIRFKNRFSLNTHMRQAHNIKARYSCNICEKKYFRLYNLRLHKMSSHFFKCDSCTRCFPTNASLLEHMQSHTNNVVDEDKTDKSGSVVDTIEAYSIPLISESPLGDRKSKKSTLCHICAKTCATPSALKRHIDHHNNIRKHKCETCGFRFTAAVQLRNHMFTHSTDRTFACEVCGKTYRTKQTLNSHMLFHDDSTLRFTCTICNNKYRRNADLKAHSRVHTGERPKICKVCGAAFSRGMAEHMRTHKDTNPFKCHLCSASFSRRRFLERHQLHCSERSTDTSVPIKRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00920809;
90% Identity: iTF_00920809;
80% Identity: iTF_00920809;