Lsta015235.1
Basic Information
- Insect
- Lordiphosa stackelbergi
- Gene Symbol
- -
- Assembly
- GCA_018904235.1
- Location
- JAEIFU010000916.1:13135-21393[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00027 0.012 15.9 2.1 1 23 115 138 115 138 0.96 2 13 0.0018 0.08 13.3 2.9 2 23 187 209 183 209 0.89 3 13 0.0097 0.42 11.0 0.8 1 23 309 332 309 332 0.93 4 13 0.12 5 7.6 3.6 2 23 381 403 380 403 0.95 5 13 0.0018 0.078 13.3 0.6 1 23 444 467 444 467 0.88 6 13 8.8 3.8e+02 1.7 0.1 2 14 486 498 485 510 0.83 7 13 0.00028 0.012 15.8 1.6 2 23 518 540 518 540 0.96 8 13 7.8e-05 0.0034 17.6 0.3 1 23 612 635 612 635 0.95 9 13 0.00089 0.038 14.3 0.2 1 23 685 708 685 708 0.93 10 13 0.0015 0.064 13.6 2.2 2 23 758 780 757 780 0.97 11 13 0.0042 0.18 12.1 3.8 1 23 865 887 865 888 0.94 12 13 0.18 7.6 7.0 1.5 1 21 940 960 940 961 0.95 13 13 1.1 47 4.5 0.2 2 14 1001 1013 1000 1025 0.73
Sequence Information
- Coding Sequence
- ATGGAAGGCATGGACCTGTGGACGTCAATGTTCTCCAATGATTTTGAGGAGGGTGAGCAGCAGTATGGCAATGGTGGCTCCAAGCAACCCGATCCGGATGATGATGCCATATTTGATTTTGAACTGGAGCCCATTGTAAGCATTGCAGAACAACCGCCACCAATGCAGCCTTTAGCACCGGCTGTGCGTCCCCTGCAGCGTCAATCGCTGCCCGCCGCCAGCTCCCAGCCAGGAAGGCCCAAAGAGATGCGTCTGTCTGGTATACCCATGCGTCCCACCACCTCACAGATCAATGCCACAGATTCCAATGGAGTGCCCATTAATTATGAATTGGGCGTCATTTATATATGCCCCGCCTGCGGTTCGGAGTTCCGGCAGCAGGATCACTGGAAACGTCACATGAATCATATGCATCAGTTTAATACACGTCGTGGTCTGAATTTTGTGGCCATGGATAAGCTGTATCAACGCTGCCTGGAGTGCAATAAACGAATTGCCATGCACAGTCGGGAGAATCTGCTGAAGCATAAGTTTACCCATTTGCCATATCGTTGCACCAAGTGTTACATCTGCAAGCGGGAGTACAAGTATAGGCAAGATTTGATGGTTCATTTGCGTATGGTGCATTGTGACGAAGTGCTGGCCATGATGCAGGATGGTTACTCAGCAGCGGGACGCAAGACACGTGTACGTGAGCCGCGCACTGAACAAATGCAACTCAAGGAGCTCTACCCAGAAGATGATCTTGATATTGTGGTTAGAAATGAAGTACTCGAACCCGATGCAGATGAGTCCAATTATGGACTGTCCTCCAACTCCTTGGGGGATTTGGATTCCCCGCAAATTATGGGTAAAAACAAGAAAAAACACAAGATGGGACCAGCTGGAAATGGTGCAGCGGATCTCTGTGAAGATTATATACACTACATGTGCCCGGACTGTGGTACCGAATGCGATACACACGCTCAATGGAGCCAGCACATAGAGTTTGTGCACGATTATGTGAGTCGACGGGGATTAAATTTCAGAAGCGTGGATATGCAAATGCAGTGTTTGGAATGCAAGAAGATTGTCACCCCCAACACTATTAAGACGCTGCGTGCCCACAAATTCAGTCATTTGTCTCAGCCCGAGTGGTTGCGTTGCAAACTGTGCTATAAGGGTTATACCGAGCATCATGAATTGGTGACACATTTGCTGAAGCAACACAATCTGGAGACTCTAATGCCAGCCGCAGAGCCAGAGGCTGAAGATGAGGATGAGCAAGGCAATGGCAATGATTTGTACGATGATGATGGCACCGATGATATGTATGAGCCGCATATTGATTACCTTTGCCCGCAGTGCGGCAAGGAGTTTATAGAGAAGAAACATTGGCGCACTCATGTGGTACAGGTGCATGGCATGAATGACATTGCCAAGCTAAACTTTGAGCTCATCAATGAGCGTCAACTGAAGTGCACAGAGTGCGAGAAGATTATTACCAATGCCTATGGCATACAGAATGCCCAACAGCATCGAATTACCCACTTGCCGTTCAAGGCGTATGCCAGATGTCGCAAGTGCAACAAATCGTATACAGATCGCAAAGGTTTGGTCAAACATTTGGCCACCTATCATCGTGTGGGCTATGAGTTGCAGAAAAGGGGAGCTCCGCCCAATGTCAAACAGCCGCGTAAGCAAGTGGTAACGGTGGCCAATGAAACCTATGAGATTATTTATTTGGATGACGAACAGTCCAATATAGAGGAGAATGATTTTGGTGAACAAATGCAGGCGGATGAGGATGATTATCCTTTAACACCCACTGGGCCGCCTCTTAATACCAATCGCTACAAGTGCGTGGACTGTGGCCATCAATTTGCCACACAGGCAGCTTTGAAAATGCACATAAGCGAGGAGCATGATTTTATGGAATCTCCCTTCAGTGCCAAGAAATTGGTCAAAGCCGATTCCTCCGCAGAGGAGTTAAAAAAGACACCAACTGCCCAGCCAGCTGGAGGCAATACACGTCCTCCTCAGGCTGGTGCCACCATTGAGCAGAGCTATATATTCCTTTGCCCCTCCTGCGGGGAGGAGTACAAGACCCAGTTTGAGTGGCGACGTCACATCAACGAGGCCCACAACTTTGACAAGCGTCAGTACTTGAATATGCGCCAATTGGACAAATATCGCTATCAATGCACCCAATGCAAAGATGTGGTATCCAATTCCAAGCTCAAGGGTCTGCAGGATCATCATTTCCGGCATTTGCCGTATCGTCTCTATCTCAAGTGTTTGGTCTGTGGCACCTGTTACAACCACAAGCCAAACATAGCTGCCCATTTGAGAACGCGACACAACATCTTTGAGCGAGAGACACCTTGGCGAGAACAGCCCAATAAACCACAATACTCATATGTTCAGTCCAAGGACAGGGACAAGGATAAGGACACGGATCAACAGTCATCTTCTTCTTCGTCAGCCACTGCCTTGGCCAGCAGTCGCTTGCTTAAGCCCCAAACCGGTAGCCTGCCCACACGACCAGCTGGTCTTAATACCCTGGAGGATAGCATTTCGTATCACAATGCTGTGGATTTGGATTTCATCACCTACTATTGCCCCAAATGTAATAAGAACTTTGATTCCCATGCCTTTTGGCGCAAACACATTGTGGAGCATCACAACTACAACAGTCGGGAGGGTCTCAATTTCCGTCAAATCGATAACCATCACTACCTGTGCCTGGAGTGCTACAAGCGTGTCACTGTCACCCATACCAAGGGTGCCATTGGTCAGCTGCAGTCGCACAAGTTCCGGCATTTGCCCTATCGCTCCTTCAAGTGTTTGACCTGCAGCGGCGAGTTTGTGCGTAAGCAAATGTTCTTCAAGCATTTGAATCGGGATACAAATCGTTGCGACAACCGGCCCACAACTGGCGAGGATCAAGAGCCTCAGCAGGGCTCTGTGGAAGTAACCACTGTGGATGACGAGGAAGTAGATCCCTCCGCCTATCGTTTGACCTGCCCACAGTGTGGTGATCATTTCACCACCAGCAGCAAAGCGGTGTGGCGTGAGCACATCAACATCTACCATGGTCTGGGCAAAAAGGAACTGCTGCATATGCGCAAAGTGGGCGATGATCTATATCGTTGCTATGATTGCGATGAGCAGCTGCAGACCAAGAAGCTGCGTGTTTTGCAGCAGCATCGTTTCCGTCATCTGCCCTATGCCGCCTACATACGCTGTCAGCTGTGCGAGAATCAGGACGAGAATGGTGTGGGACATGGAGCTGCTGCAGCCGGACTGCACAGCATGCGAGAGCTACAGCAGCATATACGTGAACATCATCCCACCGTGGAGGAGAGTGATGAGCAAATGCAAAAGGTGCGACAACAGGCCGATCAAGAAGACGCCGATGAGGATAGTCAGCCAGCACATGATGGTGGTCCCTACATGCCGCTGCCGCCCCATTTGATGGACGATACGGAAGACTTTGAGGAACAATATTTACTGGGCTAG
- Protein Sequence
- MEGMDLWTSMFSNDFEEGEQQYGNGGSKQPDPDDDAIFDFELEPIVSIAEQPPPMQPLAPAVRPLQRQSLPAASSQPGRPKEMRLSGIPMRPTTSQINATDSNGVPINYELGVIYICPACGSEFRQQDHWKRHMNHMHQFNTRRGLNFVAMDKLYQRCLECNKRIAMHSRENLLKHKFTHLPYRCTKCYICKREYKYRQDLMVHLRMVHCDEVLAMMQDGYSAAGRKTRVREPRTEQMQLKELYPEDDLDIVVRNEVLEPDADESNYGLSSNSLGDLDSPQIMGKNKKKHKMGPAGNGAADLCEDYIHYMCPDCGTECDTHAQWSQHIEFVHDYVSRRGLNFRSVDMQMQCLECKKIVTPNTIKTLRAHKFSHLSQPEWLRCKLCYKGYTEHHELVTHLLKQHNLETLMPAAEPEAEDEDEQGNGNDLYDDDGTDDMYEPHIDYLCPQCGKEFIEKKHWRTHVVQVHGMNDIAKLNFELINERQLKCTECEKIITNAYGIQNAQQHRITHLPFKAYARCRKCNKSYTDRKGLVKHLATYHRVGYELQKRGAPPNVKQPRKQVVTVANETYEIIYLDDEQSNIEENDFGEQMQADEDDYPLTPTGPPLNTNRYKCVDCGHQFATQAALKMHISEEHDFMESPFSAKKLVKADSSAEELKKTPTAQPAGGNTRPPQAGATIEQSYIFLCPSCGEEYKTQFEWRRHINEAHNFDKRQYLNMRQLDKYRYQCTQCKDVVSNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNIFERETPWREQPNKPQYSYVQSKDRDKDKDTDQQSSSSSSATALASSRLLKPQTGSLPTRPAGLNTLEDSISYHNAVDLDFITYYCPKCNKNFDSHAFWRKHIVEHHNYNSREGLNFRQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCSGEFVRKQMFFKHLNRDTNRCDNRPTTGEDQEPQQGSVEVTTVDDEEVDPSAYRLTCPQCGDHFTTSSKAVWREHINIYHGLGKKELLHMRKVGDDLYRCYDCDEQLQTKKLRVLQQHRFRHLPYAAYIRCQLCENQDENGVGHGAAAAGLHSMRELQQHIREHHPTVEESDEQMQKVRQQADQEDADEDSQPAHDGGPYMPLPPHLMDDTEDFEEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00918569;
- 80% Identity
- -