Lmag004598.1
Basic Information
- Insect
- Lordiphosa magnipectinata
- Gene Symbol
- -
- Assembly
- GCA_018904285.1
- Location
- JBAMBO010000903.1:32340-42801[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00031 0.024 15.8 2.1 1 23 168 191 168 191 0.96 2 12 0.0021 0.16 13.2 2.9 2 23 240 262 236 262 0.89 3 12 0.011 0.83 10.9 0.8 1 23 362 385 362 385 0.93 4 12 0.13 9.9 7.5 3.6 2 23 434 456 433 456 0.95 5 12 0.0021 0.15 13.2 0.6 1 23 511 534 511 534 0.88 6 12 0.00033 0.025 15.7 1.6 2 23 585 607 585 607 0.96 7 12 8.9e-05 0.0067 17.5 0.3 1 23 684 707 684 707 0.95 8 12 0.001 0.076 14.2 0.2 1 23 756 779 756 779 0.93 9 12 0.0017 0.13 13.5 2.2 2 23 829 851 828 851 0.97 10 12 0.0048 0.36 12.0 3.8 1 23 936 958 936 959 0.94 11 12 0.2 15 6.9 1.5 1 21 1011 1031 1011 1032 0.95 12 12 1.2 93 4.5 0.2 2 14 1071 1083 1070 1095 0.73
Sequence Information
- Coding Sequence
- ATGGAAGGAATGGACCTGTGGACGTCAATGTTCTCCAATGATTTTGATGAGGGTGAGCAGTATGGCAATGGTACGGGTGCGGGTGACGTTGAAACTGCAGCCGATACAGATCACATCATGGCCGAAGATGATGTTGAAGGTGTGggggacgacgacgacgacgatgatgatgatgatgatgacttgCTGGAAGAGGCAGGTGGTGATGAAAGTGACGAAAATGGCAAAAATGGTCAGTCCAAACAACCCGATCCGGATGATGATGCCATATTTGATTTTGAACTGGAGCCCATTGTAAGCATTGCTGAACCGCCGCCAGCAATGCCGCCTTTAGCCCCCGCCGTGCGTCCCCTGCAGCGTCAATCGCTGCCCTCCACCAGCTCCCTGCCAGGACGTCCTAAAGAGATGCGTATGTCTGGTATACCCATGCGTCCCACCACCTCACAGATCAATGCCACAGATTCCAACGGAGTGCCCATTAATTATGAATTGGGCGTCATTTATATATGCCCCGCTTGCGGTTCGGAGTTCCGGCAGCAGGATCACTGGAAACGTCACATGAATCATATGCATCAGTTTAATACACGTCGTGGTCTGAATTTTGTGGCCATGGATAAGCTGTATCAACGCTGCTTGGAGTGCAATAAACGAATTGCCATGCACAGTCGTGAGAATCTGCTGAAGCATAAGTTCACCCATTTGCCATATCGTTGCACCAAGTGTTACATCTGCAAGCGGGAGTACAAGTATAGGCAAGATTTGATGGTTCATTTGCGTATGGTGCATTGTGACGAAGTTCTGGCCATGATGCAGGATGGCTACTCAGCAGCGGGACGCAAGACACGTGTACGTGAGCCGCGCACTGAACAAATGCAACTCAAGGAGCTCTACCCAGAAGATGATCTTGATATTGTGGTAAGAAATGAAGTACTCGAACCAGATGCAGATGAATCCAATTATGGAGCGTCCTCCACTTCCTTGGGGGATATGGATTCCACGCATGTTATGGGAAAAAGcaagaaaaaacaaaagatggGAACAGTTGGAAATGGTGCAGCGGATCTATGTGAAGATTATATACACTACATGTGCCCAGATTGTGGCACCGAATGCGATACGCACGCTCAATGGAGCCAACATATTGAGTTTGTGCACGATTATGTGAGTCGGCGGGGATTAAATTTCAGAAGCGTTGACATGCAAATGCAGTGCTTGGAATGCAAGAAGATTGTCACCCCCAACACGATTAAGACGCTGCGTGCCCACAAATTCAGTCATTTGCCTCAGCCCGAATGGTTGCGTTGCAAGCTGTGCTACAAGGGTTATACCGAGCATCATGAGTTGGTGACACATCTGCTCAAGCAACACAATCTGGAGACTCTGATGCCAGCCGCCGAAACGGAGGTAGATGATGAAGATGAGCAAGGCAATGGCAATGATTTGTATGATGATGACTCTCAGTGGAATGATGAGGCACCACGTCGTGGCGGTCGTATTGGCACCGATGATATGTATGAGCCACACATTGATTACCTTTGCCCGCAGTGCGGCAAGGAGTTTATAGAGAAGAAACATTGGCGCACTCATGTGGTACAGGTGCATGGCATGAATGACATTGCCAAGCTCAACTTTGAGCTCATCAATGAGCGTCAACTCAAGTGCACGGAGTGTGAAAAGATCATCACGAATGCCTATGGTATACAGAATGCCCAACAGCATCGGATTACGCATTTGCCGTTCAAGGCGTATGCCAGATGTCGCAAGTGCAACAAATCCTATACAGATCGCAAGGGTTTGGTCAAGCATTTGGCCACCTATCATCGTGTGGGCTATGAATTGCAGAAAAGGGGCGCATCAGGAgcgcctcctcctcctgctgtCAAACAGCCGCGTAAACAAGTCGTTACGGTGGCCAATGAAACCTATGAGATTATCTATTTGGATGACGAGCAGTCCAATATTGAGGAGAATGATTTTGGTGAACAAATGCAGGCGGATGAGGATGATTATCCACTAACACCCACTGGCCCGCCCGTTAATACCAATCGCTACAAGTGCGTCGACTGTGGCCATCAATTTGCCACACAGGCGGCTCTGAAAATGCACATAAGCGAGGAGCATGACTTTATGGAATCTCCATTCAGTGCCAAGAAGTTGGTCAAAGCCGAGTCCTCCACGGAGGAGATTAAAAAGACCCCAACAGCAACGCCAGCCGGTGCCAATGCACGCCCTCATGCAGGTGCTACCATTGAGCAGAGTTATATATTCCTTTGCCCGTCCTGCGGCGAGGAGTACAAGACGCAGTTTGAGTGGCGACGCCACATCAACGAGGCCCACAACTTTGACAAGCGTCAGTACTTGAATATGCGCCAGTTGGACAAGTATCGCTATCAATGCACTCAATGCAAGGATGTGGTATCCAATTCCAAGCTCAAGGGTCTGCAGGATCATCATTTCCGGCATCTGCCGTATCGTCTCTATCTCAAGTGTTTGGTCTGTGGCACCTGTTACAATCACAAGCCGAATATAGCCGCTCATTTGAGGACGCGACATAATATCTTTGAGCGGGAGACGCCTTGGCGGGAACAGCCCAATAAACCACAATACTCTTATGTTCAGTCCAAGGACAGGGAGAAGGATAAGGACACGGATCAGCAGTCGTCTTCTTCTTCGTCGGCCACTGCTTTGGCCAGCAGTCGCTTGCTTAAGCCCCAAACAGGTAGCCTGCCGACACGACCAGCCGGTCTCAATACGCTAGAGGATAGCATTTCGTATCACAATGCTGTGGATTTGGATTTCATCACCTACTATTGCCCCAAATGTAATAAGAACTTTGATTCCCATGCCTTCTGGCGCAAACACATTGTGGAGCATCACAACTACAACAGTCGGGAGGGTCTCAATTTCCGTCAGATCGATAACCATCACTACCTGTGCCTGGAGTGCTATAAGCGTGTCACTGTGACCCACACCAAGGGTGCCATTGGTCAGCTGCAGTCGCACAAGTTCCGGCATCTGCCCTATCGCTCCTTCAAGTGTTTGACCTGCAGCGGGGAGTTTGTGCGTAAGCAAATGTTCTTCAAGCATTTGAACAGAGATACAAATCGTTGCGACAACCGGCCCACTGGCGAAGATCAAGAGCCTCAGCAGGGCTCTGTTGAAGTGACCACTGTGGATGACGAGGAAGTAGACCCCTCCGCCTATCGTTTGACCTGTCCGCAGTGTGGTGATCATTTCACCACCAGCAGCAAAGCGGTGTGGCGTGAGCACATCAACATCTACCATGGACTGGGCAAGAAGGAACTGCTGCATATGCGCAAAGTGGGCGATGATCTATATCGCTGCTATGATTGCGATGAGCAGCTGCAGACGAAGAAGCTGCGTGTACTACAGCAGCATCGTTTCCGTCATCTGCCCTATGCCGCCTACATACGCTGCCAGCTATGCGAGAATCAGGACGAGAACGGACTGGGACATGGAGCTGCTGCAGCCGGACTGCACAGCATGCGAGAGCTACAGCAGCATATACGTGAACAGCATCCCACCGTGGAGGAGAGTGATGAGCAAATGCAAAAGGTGCGACAGCAGGCCGATCAAGAAGACGCCGACGAGGATAGTCAGCCAGCACATGAACATGATGGTCCCTACATGCCGCTACCGCCCCATTTGATGGACGAGACGGAAGACTTTGAGGAACAATATTTACTGGGCTAG
- Protein Sequence
- MEGMDLWTSMFSNDFDEGEQYGNGTGAGDVETAADTDHIMAEDDVEGVGDDDDDDDDDDDDLLEEAGGDESDENGKNGQSKQPDPDDDAIFDFELEPIVSIAEPPPAMPPLAPAVRPLQRQSLPSTSSLPGRPKEMRMSGIPMRPTTSQINATDSNGVPINYELGVIYICPACGSEFRQQDHWKRHMNHMHQFNTRRGLNFVAMDKLYQRCLECNKRIAMHSRENLLKHKFTHLPYRCTKCYICKREYKYRQDLMVHLRMVHCDEVLAMMQDGYSAAGRKTRVREPRTEQMQLKELYPEDDLDIVVRNEVLEPDADESNYGASSTSLGDMDSTHVMGKSKKKQKMGTVGNGAADLCEDYIHYMCPDCGTECDTHAQWSQHIEFVHDYVSRRGLNFRSVDMQMQCLECKKIVTPNTIKTLRAHKFSHLPQPEWLRCKLCYKGYTEHHELVTHLLKQHNLETLMPAAETEVDDEDEQGNGNDLYDDDSQWNDEAPRRGGRIGTDDMYEPHIDYLCPQCGKEFIEKKHWRTHVVQVHGMNDIAKLNFELINERQLKCTECEKIITNAYGIQNAQQHRITHLPFKAYARCRKCNKSYTDRKGLVKHLATYHRVGYELQKRGASGAPPPPAVKQPRKQVVTVANETYEIIYLDDEQSNIEENDFGEQMQADEDDYPLTPTGPPVNTNRYKCVDCGHQFATQAALKMHISEEHDFMESPFSAKKLVKAESSTEEIKKTPTATPAGANARPHAGATIEQSYIFLCPSCGEEYKTQFEWRRHINEAHNFDKRQYLNMRQLDKYRYQCTQCKDVVSNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNIFERETPWREQPNKPQYSYVQSKDREKDKDTDQQSSSSSSATALASSRLLKPQTGSLPTRPAGLNTLEDSISYHNAVDLDFITYYCPKCNKNFDSHAFWRKHIVEHHNYNSREGLNFRQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCSGEFVRKQMFFKHLNRDTNRCDNRPTGEDQEPQQGSVEVTTVDDEEVDPSAYRLTCPQCGDHFTTSSKAVWREHINIYHGLGKKELLHMRKVGDDLYRCYDCDEQLQTKKLRVLQQHRFRHLPYAAYIRCQLCENQDENGLGHGAAAAGLHSMRELQQHIREQHPTVEESDEQMQKVRQQADQEDADEDSQPAHEHDGPYMPLPPHLMDETEDFEEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00915764; iTF_00920221;
- 80% Identity
- -