Basic Information

Insect: Lordiphosa stackelbergi
Gene Symbol: ush
Assembly: GCA_018904235.1
Location: JAEIFU010000702.1:24195-35036[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.1 4.4 7.8 0.1 6 20 187 201 183 203 0.96

2 9 0.00037 0.016 15.5 0.8 1 23 254 276 254 276 0.98

3 9 0.065 2.8 8.4 1.0 2 21 313 332 313 333 0.92

4 9 0.063 2.8 8.4 2.9 2 21 690 709 689 710 0.93

5 9 0.012 0.51 10.7 0.0 3 21 761 779 759 780 0.91

6 9 0.0073 0.32 11.4 0.0 2 23 835 856 834 856 0.98

7 9 0.005 0.22 11.9 1.3 1 23 862 884 862 884 0.99

8 9 0.0009 0.039 14.2 0.8 1 23 929 952 929 952 0.96

9 9 0.25 11 6.5 1.0 2 20 1055 1073 1054 1075 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.1	4.4	7.8	0.1	6	20	187	201	183	203	0.96
2	9	0.00037	0.016	15.5	0.8	1	23	254	276	254	276	0.98
3	9	0.065	2.8	8.4	1.0	2	21	313	332	313	333	0.92
4	9	0.063	2.8	8.4	2.9	2	21	690	709	689	710	0.93
5	9	0.012	0.51	10.7	0.0	3	21	761	779	759	780	0.91
6	9	0.0073	0.32	11.4	0.0	2	23	835	856	834	856	0.98
7	9	0.005	0.22	11.9	1.3	1	23	862	884	862	884	0.99
8	9	0.0009	0.039	14.2	0.8	1	23	929	952	929	952	0.96
9	9	0.25	11	6.5	1.0	2	20	1055	1073	1054	1075	0.92

Sequence Information

Coding Sequence: ATGCTCCAGGAGAAGCAGGAGGGGGAGGAGCGGGAGGTGGTGGTGGTGCTGATGGTGGATGATTCCAAAGATTTAGGCGAGGAGAAGCAGCAACAGCTCGATGAGCTACCGCTTGATGATCAAACAGACAGTCAAACCCATAACAATAATAACAACAATGTCGCCGAACAGCCTGATGACACCAATTCTGATCAAGAACAGGAGGATATGGATACGTCCCTAGAGAAGGAGAAGGAGGCTTTTAAGGAGCCAGAGACCAGCAATTCCAGCAGTCCACTGCCTCCTAGTTCAACACCAGAACTGGTGCCTAAGCTAGAGCAACCGGCCACACCTCCTTCTCGCACACCCTCACCCACACCCTCGCCCACCTTACCCAAATTGCGTCTGAATGCTCTGCTAGCCTCTGATCCGGCACTCAAACCTGATGCCAAAGAGCTTAATCTGCACGAATCACGACTGCTGGGTCCACCAACTTTGGCCAATAAGCCCGAACAGCAGTCGCCTGCCTCTGAGCCAGTAGAGCCCCTCATAAAACCCACTAGATTCATGTGTATACCCTGTCACATAGCCTTCAGTTCGCCCTCCACTTTGGAGGCACATCAAGCCTTCTACTGTTCGCATCGCATTAAGAGCACAGAGGACGACACAGCTGGAGGGGAAAAATCCGCTGGTGGAGCGGCTGCCTCAGCGTCTGCAACTGCAGGAAACAGCACTGGTGGTGGCGAACCTCTCGCCAAAGTGGCACGCCTGGGGAAGCAATATGCCTGCACTCAATGCTCCTACAGTGCGGACAAGAAGGTCTCTCTCAATCGTCATATGCGAATGCATCAAACCTCACCGGCACCCAGCTTAAGCCTGACCCCCAATGGTGGTGTCCCCTCAACGGTAGTGGGCAATACGCTCGAGGAGAGTTCTAGTCAACAGCAAATCGATCGCTATTGCAGCGACTGTGATATCCGTTTTAATAACATCAAGACCTATCGAGCACATAAGCAACACTACTGCAGCTCTCGACGCACGGATGGTCAATTAACGCCCAAACCTGAAGCGGGCGGTGGAACTGCAACGGGAGCTGCGGGTACAGCTGGTACAGCGCATAGTCCACAGACCACACGGAATAAGACTCCCACGCCAGCTATGGTGGCTGCCGCTGCAGCTGCGGCGGCAGCAGCCGCAGTTTCCTTGCAGGCTCCGCCGCCTCAACCCTTTCTGGCACTGCCCACCAATCCTATAATAATAGTGCCCTGCTCACTGATACGAGCGGCCAGCCTTATACCAGGACCACTCACCACCTCCACATCTGGTATAGTAAATCCAGAGTCCACCTGCTTCACCCTAGACAATGGTTCACTTAAACCCTTGGCCACGGCCTTGAACATGCTACCCAATATACCACCCGGCAATCCTCTGGCCATACCCGGCCTGGAAACAGCCGGTGGAGCAGGTTTAGCAGTTAATAAGTCAGTGGATTGCCCGGCTGAGCTTAAAAATAGTCCGCCGGAACCCAAGCGCAAAGAAGCTGGCGGTAGTCGTGAATCTGCGCCTTTGGATTTGTCACTGCGACGTTCGCCCATTTCGGCTTTGCTTCAGCGTCAGCGTCTGGTACGCTCTGCCGCAGCTCTGCTAGATGTGGAGGAAGCTCTGCTGGGACCCGGGAAAGAAAATTTGGAAAGCGGTGGCAGTGTCACACCCGAACAGATTGTGTGTGCCCCCTCTCTACCCAGCAGCCCCTCGATGAGTCCCTCGCCCAAGCGGCGAGCCATCAGTCCCCGTAGCTCGGGAGCGGGAAGTAACGCCTCCATGTCGCCACCGGCTCTAAATGTGGCTGTTCCACATTTACTAGAAAACTTGCCTCCTTTACGTTCCATGTTGCCGGCGGATTTTGCCTTGTCCGAATCTCTGCTGGCCAAGACCAATCCAGAGCTGGCACTCAAATTGGCCGCCGAGCTGGCCGGGAAACTGGGTTTTGCCCAGGCTGCAGTTCCCACGCCCACAGTGGCTCCACCATCAGTAGCTAATCCCAACCCTGCGGCCCAGCCACAGGTGTATGTGAAGCAGGGTGTGTCCAAGTGCAAGGAATGTAACATAGTTTTTTGCAAATACGAGAATTATTTGGCCCACAAGCAGCACTATTGTTCCGCCCGTAACCAGGAGGGAGCTGGAGTGGAGGGTGACTCTACTAAAGCCTCCTCCAGCACCCCACCGGCTGCAGGCGGCCCTGGCGGTGGTAATAACTCTGCCGGGCCTGAGACCACACCGGTGGCCTATCAGCAACTCATCTGTGCCGCCTGTGGAATCAAATACACCTCACTGGATAATCTGCGTGCCCATCAGAACTACTACTGTCCCAAAGGAGGAGCCACACCCACGCCCACCGCACCTAATCACGAGAAGGAAAAGTGTTCAAAGTGCAAGACTTTGCATGATCCCGACAGCAGCAGCAGCACCTCGGCCACCCTACCCACTCCCAGCCCCAGCGCCAGCAGCAGCGGCAGCGTCAACAAGTGTCCCGTTTGCGGTGTGGTCAGTGCCACCGCCGCTTTGGCTCGCAAGCACATGGAGATGCACGGCACCGTGAAAGCCTTCCGCTGCAGCATCTGCCAGTACAAGGGCAATACCCTGCGTGGCATGCGCACCCACATACGCACCCATTTCGACAAGAAGACCAGCGATGTCAATGAAGAGCACTACATGACCTGCATTTTTGAGGAGGAGGGAGTAGAGCTACCACCGGCTGCAGCGGCCGTGCAGGAGCAATTGGATCAGCAGCTGCCACCACAGCTCTTCAATTGCGATTACTGCAATTATGCCTCCACCTACAAGGGCAATGTGCTGCGTCACATGAAGCTATTGCATCCCCATGTGACCATCAATTCACCCTCTATATCACCCGAAACACGCGAGCAGCAAGAGACTATTGCCAATACTATACCTGAGGTGGTAAACGGAGAAGCGGCTGCCAGCTTCCGCATCAAATCGGAACCCCAAGAGCATCCACCAACGCTCAGTCTGGTGCACGAGAACAATAACTCACCCATAGCGACGCCGCACATCAAGGCAGAACCTTTGGACATTGATGTGTCAGCCACTTCATTGGCTTTGCCGCCACCGCCTATTGTTTCACCCGAATTGGCAGCCGCTGCTGCGGAAGCCATGAGAAAATACTGCTCCACCTGCGACATATCCTTTAACTATACAAAAACCTTTCTGGCCCATAAGCAATTCTACTGCAAGAGCAAAATTCAAAGACCCGAAGCCAATGAAAGTCCCAGTCCCAATCATGTAGCTGCTGCTGCTGCTGGATTGGGGGTTCAGGGTCTGCCATCGCCTAACGAGTTAATAATGCTGCAGAAGAATAAGGAGAATCTGCAGGAGGCGGCCATTTGA
Protein Sequence: MLQEKQEGEEREVVVVLMVDDSKDLGEEKQQQLDELPLDDQTDSQTHNNNNNNVAEQPDDTNSDQEQEDMDTSLEKEKEAFKEPETSNSSSPLPPSSTPELVPKLEQPATPPSRTPSPTPSPTLPKLRLNALLASDPALKPDAKELNLHESRLLGPPTLANKPEQQSPASEPVEPLIKPTRFMCIPCHIAFSSPSTLEAHQAFYCSHRIKSTEDDTAGGEKSAGGAAASASATAGNSTGGGEPLAKVARLGKQYACTQCSYSADKKVSLNRHMRMHQTSPAPSLSLTPNGGVPSTVVGNTLEESSSQQQIDRYCSDCDIRFNNIKTYRAHKQHYCSSRRTDGQLTPKPEAGGGTATGAAGTAGTAHSPQTTRNKTPTPAMVAAAAAAAAAAAVSLQAPPPQPFLALPTNPIIIVPCSLIRAASLIPGPLTTSTSGIVNPESTCFTLDNGSLKPLATALNMLPNIPPGNPLAIPGLETAGGAGLAVNKSVDCPAELKNSPPEPKRKEAGGSRESAPLDLSLRRSPISALLQRQRLVRSAAALLDVEEALLGPGKENLESGGSVTPEQIVCAPSLPSSPSMSPSPKRRAISPRSSGAGSNASMSPPALNVAVPHLLENLPPLRSMLPADFALSESLLAKTNPELALKLAAELAGKLGFAQAAVPTPTVAPPSVANPNPAAQPQVYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEGAGVEGDSTKASSSTPPAAGGPGGGNNSAGPETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGATPTPTAPNHEKEKCSKCKTLHDPDSSSSTSATLPTPSPSASSSGSVNKCPVCGVVSATAALARKHMEMHGTVKAFRCSICQYKGNTLRGMRTHIRTHFDKKTSDVNEEHYMTCIFEEEGVELPPAAAAVQEQLDQQLPPQLFNCDYCNYASTYKGNVLRHMKLLHPHVTINSPSISPETREQQETIANTIPEVVNGEAAASFRIKSEPQEHPPTLSLVHENNNSPIATPHIKAEPLDIDVSATSLALPPPPIVSPELAAAAAEAMRKYCSTCDISFNYTKTFLAHKQFYCKSKIQRPEANESPSPNHVAAAAAGLGVQGLPSPNELIMLQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00916667;
90% Identity: iTF_00915758;
80% Identity: -