Basic Information

Insect: Lordiphosa collinella
Gene Symbol: ush
Assembly: GCA_018904265.1
Location: JAEIFV010000573.1:85852-95952[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.011 0.52 11.1 0.0 1 20 197 216 197 218 0.90

2 9 0.00045 0.022 15.4 0.8 1 23 269 291 269 291 0.98

3 9 0.081 4 8.3 1.0 2 21 328 347 328 348 0.92

4 9 0.079 3.9 8.4 2.9 2 21 705 724 704 725 0.93

5 9 0.015 0.71 10.7 0.0 3 21 773 791 771 792 0.91

6 9 0.012 0.57 11.0 0.0 2 23 864 885 863 885 0.98

7 9 0.0061 0.3 11.9 1.3 1 23 891 913 891 913 0.99

8 9 0.0011 0.055 14.2 0.8 1 23 958 981 958 981 0.96

9 9 0.49 24 5.9 0.7 2 20 1084 1102 1083 1104 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.011	0.52	11.1	0.0	1	20	197	216	197	218	0.90
2	9	0.00045	0.022	15.4	0.8	1	23	269	291	269	291	0.98
3	9	0.081	4	8.3	1.0	2	21	328	347	328	348	0.92
4	9	0.079	3.9	8.4	2.9	2	21	705	724	704	725	0.93
5	9	0.015	0.71	10.7	0.0	3	21	773	791	771	792	0.91
6	9	0.012	0.57	11.0	0.0	2	23	864	885	863	885	0.98
7	9	0.0061	0.3	11.9	1.3	1	23	891	913	891	913	0.99
8	9	0.0011	0.055	14.2	0.8	1	23	958	981	958	981	0.96
9	9	0.49	24	5.9	0.7	2	20	1084	1102	1083	1104	0.91

Sequence Information

Coding Sequence: ATGCTCCAGGAGAAGCAGGAGGAGGTGGTGGCGGCGGCGGTGGTGGTGGTGATGGTGGATGGCAAAGAAGATTGCTCACGTGCAGAATTGTATTCCAAAGATTTAGGCGAGGAGAAGCAGCAACAGCTCGATGAGCAACCACTTGATGATCAAACAGAGAGTCAAACCCATAACAACAATAACAACAATATCGCCGAACAGCCGGATGACACCAATTCCGATCAAGAACAGGAGGAAATGGATACGTCCCTAGAAAAGGAGAAGGAGGCTTTTAAGAAGCCGGAGACCAGCAATTCCAGCAGCCCACTGCCTCCTAGTTCACCACCAGATCTGGTGCCCAAGCTAGAGCAACCGGCCACACCTCCTTCTCGCACACCCTCACCACCACCCTCGCCATCACCCACTCCACCCACCTTACCCAAATTGCGTCTGAATGCCCTGCTAGCCTCTGATCCGGCACTCAAACCAGATGCCAAAGAGCTTAACCTGCACGAATCACGACTGCTGGGTCCACCAACTTTGGCCAATAAGCCCGAACAGCCGTCGCCAGCCGCCGAGCTGGTAGAGCCCCTCATAAAACCCACCAGATTTATGTGTCTACCCTGTGGCATAGCCTTTAGTTCACCCTCTACCTTGGAGGCACATCAAGCCTACTACTGTTCGCATCGCATTAAGGATACCGAGGAGGACACAGCTGGTGGTGATAAGTCAGCCGGTGGAGCAGCTGCCTCAGCGTCTACAACTGCGGGAAATAGCACTGGCGGTGGCGAACCTCCCGCCAAGGTGGCGCGTCTGGGAAAGCAATACGCCTGCACTCAATGCTCGTACAGTGCGGACAAGAAGGTATCTCTCAATCGTCATATGCGTATGCATCAAACCTCGCCGGCACCCAGCTTAAGCCTGACACCCAATGGTGGTGTCCCCTCAACGGTAGTGGGCAATTCGCTCGAGGAGAGTTCTAGTCAACAGCAAATCGATCGCTATTGCAGCGACTGTGATATCCGTTTTAATAACATCAAGACCTATCGAGCCCATAAGCAACACTATTGCAGCTCACGACGCACGGATGGTCAATTGACGCCCAAAGCTGAAGCGGGCGGCGGAACGGCGCCGGGAGCGGTGGGTGCGGCTGGTACAGCGCATAGTCCACAGACCACACGCAATAAGACGCCCACGCCAGCTATGGTGGCGGCCGCTGCAGCTGCGGCTGCTGCAGCGGCGGTTTCTTTACAGGCTCCGCCACCTCAACCCTTTCTGGCACTGCCCACCAATCCAATAATAATAGTGCCCTGCTCATTGATACGAGCGGCTAGCCTTATACCAGGACCACTCACCACCTCTACATCGGGTATAGTAAATCCAGAGTCCACCTGCTTCACCCTAGACAATGGTTCACTCAAACCCCTGGCCACCGCCCTGAATATGCTACCCAATATACCCACCGGCAATCCTCTGACCATACCCGCCCTGGAAACAGCTGGAGGTGTGGGATTAGGAGTTAATAAGTCAGAGGATGGCCCGGCTGAGCTTAAAAATAGTCCGCCCGAACCTAAGCGCAAAGAAGCTGGTGGTAGTCGCGAATCTGCGCCCCTGGATTTGTCACTGCGACGTTCTCCCATTTCGGCTTTGCTGCAGCGTCAGCGTCTGGTACGCTCTGCCGCCGCTCTGCTGGATGTGGAGGAAGCTCTGCTAGGACCCGGCAAAGAGAATTTGGAGAGCGGTGGCAGTGTGACACCTGAACAAATTGTGTGCGCTCCTTCGCTACCCAGCAGCCCCTCGATGAGTCCCTCGCCCAAGCGACGAGCCATTAGTCCCCGCAGCTCGGGTGCGGGAAGTAATGCCTCCATGTCGCCACCGGCACTCAATGTGGCTGTGCCACATCTGTTAGAAAACTTGCCACCTTTGCGTTCCATGTTGCCGGCGGATTTTGCCTTGTCCGAATCACTGCTGGCCAAGACCAATCCAGAGCTGGCACTCAAATTGGCCGCCGAGCTGGCCGGGAAACTGGGTTTTGCCCAGGCTGCAGTGCCCCCGACCACAGTGGCTCCACCAGCCGCCGCAAATCCCAATAACGCTGCTCAGCCACAGGTGTATGTCAAACAGGGTGTGTCCAAGTGCAAGGAATGTAACATAGTTTTCTGCAAATACGAGAATTATTTGGCCCACAAGCAGCACTACTGTTCCGCCCGTAACCAGGAGGGTGCTGGAGTGGATGGTGACTCCGCTAAAGCCTCCTCCAGCACGCCACCGGCAGCAGGAGCCAGCAACAGCTCTGCAGGGCCTGAGACCACACCAGTGGCGTATCAGCAACTCATCTGTGCCGCCTGTGGCATCAAGTACACCTCACTGGATAATCTGCGTGCCCATCAGAACTACTACTGTCCCAAAGGAGGTGCCACACCCACGCCCAGCGCACCTAATCACGAGAAGGAAAAGTGTTCCAAGTGCAAGACTTTGCATGATCCAAGTTTAGCCTGTCCCACACCAACAGCAATTGTCACTGCCAATCCCAGCAGCAGCAATTCGTCCCCTCTACCCACTCCCAGCCCCAGCGTTAGCAGCAGCAGCAGCAGTAGCGGCAGCGTGAACAAGTGTCCCGTCTGCGGTGTGGTCAGTCCAACCGCCGCTATGGCTCGCAAGCACATGGAGATGCACGGCACAGTGAAAGCCTTTCGTTGCAGCATCTGTCAGTACAAGGGCAACACTTTGCGTGGCATGCGCACCCACATACGCACCCATTTCGACAAGAAGACCAGCGATGTCAATGAAGAGCACTACATGACCTGCATTTTCGAAGAGGAGGGAGTAGAGCTACCACCGGCTGCAGCACCCGTGCAGGAGCAATTGGAACAGCAGCTGCCGCCACAGCTCTTCAATTGCGATTACTGCAACTATGCCTCCACCTACAAGGGCAATGTGCTGCGTCACATGAAGCTATTGCATCCCCATGTGACCATCAATTCACCCTCCATATCACCGGAAACACGCGAGCAACAAGAGACCATTGCAACTACCATGCCTGAGGCGGTAAACGGCGAAGCGGCTGCCAGCTTCCACATCAAACCGGAACCCCAAGAGCATCCCCCAACGCTGAGTGTGGTGCACGACAACAACAACTCACCCATAGCAACACCGCACATCAAGGCAGAACCCTTGGACATAGATGTATCACCCACTTCATTGGCTTTGCCGCCACCGCCTGTTGTTTCACCCGTATTGGCCGCCGCTGCTGCGGAAGCCATGAAAAAATACTGCTCCACCTGCGACATATCCTTCAACTATGTGAAAACCTTTCTGGCCCATAAGCAATTCTACTGCAAAAGTAAAATTCAACGACCCGAAGCCAATGAAAGTCCCAGTCCCAATCATGTGGCTGCTGTTGCTGCTGCTGCTGCTGGACTGGGAGTTCAGGGTCTGCAATCGCCCAACGAGCTAATAATGTTGCAGAAGAGGGAGAATCTGCAGGAGAATCTGCAGGAGGCGGCCATTTGA
Protein Sequence: MLQEKQEEVVAAAVVVVMVDGKEDCSRAELYSKDLGEEKQQQLDEQPLDDQTESQTHNNNNNNIAEQPDDTNSDQEQEEMDTSLEKEKEAFKKPETSNSSSPLPPSSPPDLVPKLEQPATPPSRTPSPPPSPSPTPPTLPKLRLNALLASDPALKPDAKELNLHESRLLGPPTLANKPEQPSPAAELVEPLIKPTRFMCLPCGIAFSSPSTLEAHQAYYCSHRIKDTEEDTAGGDKSAGGAAASASTTAGNSTGGGEPPAKVARLGKQYACTQCSYSADKKVSLNRHMRMHQTSPAPSLSLTPNGGVPSTVVGNSLEESSSQQQIDRYCSDCDIRFNNIKTYRAHKQHYCSSRRTDGQLTPKAEAGGGTAPGAVGAAGTAHSPQTTRNKTPTPAMVAAAAAAAAAAAVSLQAPPPQPFLALPTNPIIIVPCSLIRAASLIPGPLTTSTSGIVNPESTCFTLDNGSLKPLATALNMLPNIPTGNPLTIPALETAGGVGLGVNKSEDGPAELKNSPPEPKRKEAGGSRESAPLDLSLRRSPISALLQRQRLVRSAAALLDVEEALLGPGKENLESGGSVTPEQIVCAPSLPSSPSMSPSPKRRAISPRSSGAGSNASMSPPALNVAVPHLLENLPPLRSMLPADFALSESLLAKTNPELALKLAAELAGKLGFAQAAVPPTTVAPPAAANPNNAAQPQVYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEGAGVDGDSAKASSSTPPAAGASNSSAGPETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGATPTPSAPNHEKEKCSKCKTLHDPSLACPTPTAIVTANPSSSNSSPLPTPSPSVSSSSSSSGSVNKCPVCGVVSPTAAMARKHMEMHGTVKAFRCSICQYKGNTLRGMRTHIRTHFDKKTSDVNEEHYMTCIFEEEGVELPPAAAPVQEQLEQQLPPQLFNCDYCNYASTYKGNVLRHMKLLHPHVTINSPSISPETREQQETIATTMPEAVNGEAAASFHIKPEPQEHPPTLSVVHDNNNSPIATPHIKAEPLDIDVSPTSLALPPPPVVSPVLAAAAAEAMKKYCSTCDISFNYVKTFLAHKQFYCKSKIQRPEANESPSPNHVAAVAAAAAGLGVQGLQSPNELIMLQKRENLQENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00917571; iTF_00918566; iTF_00920202; iTF_00915758; iTF_00914845; iTF_00919389;
90% Identity: iTF_00915758;
80% Identity: -