Lsta010067.1
Basic Information
- Insect
- Lordiphosa stackelbergi
- Gene Symbol
- br
- Assembly
- GCA_018904235.1
- Location
- JAEIFU010000017.1:106772-156124[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.1e-12 1.3e-08 34.2 0.0 1 40 477 517 477 520 0.90 2 4 2.2e-14 7e-11 41.5 0.1 2 39 532 569 531 572 0.94 3 4 5.2e-18 1.6e-14 53.1 0.0 1 45 586 631 586 631 0.98 4 4 5.3e-20 1.7e-16 59.5 0.0 1 43 638 681 638 682 0.97
Sequence Information
- Coding Sequence
- ATGAAGTTTCCCGCTCTTGTTTGGTATTTGCAGGGCAGCAGCAGCAGCAGCACCGACAGCCTTGAGCCACCCAACAACCACACAAGAAGAAGGCAATTGGAATCCTCTTCCACCTGCAAAATGGCTGCCGTACGTGGGCATCAATATTTCAGCCTACGCTGGAATAACTATCAAAACACAATGACCTCAGTGTTTCAACAGTTGCGCGAGGATCTATCCTTTGTCGATGTGACCTTGTCCTGTGAGCACGGTTCCCTCAAGGCGCACAAGGTCGTGCTGTCCGCCTGTTCAACGTATTTCCAAAAGCTTTTGCTCGAGAACCCATGCAAGCACCCCACAATCATTCTGCCTGCTGATATCATATTCACAGATCTGAAAACAATCATCGATTTTGTTTATCGCGGTGAGATCGATGTCACCGAATCTGAATTACAACCAACACTACGCAAGTCGCGCCTAAAGCGCTCTAAGTCGCCAGATCTGCAGCACCATCCGCAGACTATTCTTATACAGGGACAAAACCAAACGTCCATTGTGAGTCTGCAGCAGACGGTCGACGGCAATTACATACCAGTCGGCGGCAACGGCGACGACTCGGACGTGGATCAAGAGCACGAACACGAACACGTTGACGAGCACGAGCACGAGCACGATCACGATAACGATAGTAAGCCAGGGAAGATCTGCAAGACAGAGCACTCGGTGGCCTCACCAGCGTCCAACTCATCCAACGCCTCGAACAATGCAGCGGGTGTGAGCGGCGTGACAGCAGCAGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGATTCCTGGATTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAACATGTCGACCTCTCGTGCAATCCGAGTACGGATACGCGAGACTTATCAAATCCCACCGAAGCCCTCGACATTGACAATCACCTGGCGCAACAAATCCATCGGCTTGATCAATCTCCCATGCATTCGATAGGTCATCATCACACTGGCGATGAGAGCAACTCGCAGCTAGTGCAGCACATCAAAATCATGGAGATTGATCCGAGTCAAATAAAGCATGAGCCAGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCGTCTGGTCATATGGACATGTACAACTCGGATACGAGCGAGGACTCCATGATGATCGCTAATGGCTCTCCGCACGATCAAAAGGAGCCGCACTATACGAATTTGGATCAGCAACACGGCCTGGGTGGCAGCGTTTGCGGCCCCGGCCCAGGTGGTGCTGGTGGTGGCATTGGTGGTGGGGCTGGCTCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCCTCGACCACGCTGTGGCAACGGGCTCACCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAATCATGGAACGAAGATGCATTACAGAATGCCTTGGAGGCATTGCGATCGGGTCAGATATCCGCGAATAAAGCATCGAAAGCCTTTGGCATACCCTCATCGACGCTGTACAAGATAGCGCGTCGGGAGGGCATCCGTTTGGCTGCACCATTTAATGCCGCCCCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTGGAGGCAATTCGAGCGGGTAATACGTCTGTACAAAAAGCGAGTGCCGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAACGCGAGGGCATTGAACTGTCGCGGTCGAATCCCACACCATGGTCCGAAGATGCCATGAACGAGGCCTTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCGATACACTACAACCTGCCCTATAGCTCGCTGTACGGCCGCTTCAAACGGGGCAAATACGACGTGGTGGCGAATACAAGTGGAGTGGCGCTAATGAATACCTCAGGCAACACAACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGCTTGCAAAGGAGGAGCATGACATGCTTAACCATCCCTTCGACCTCAAGGGGGCACTGTTTCGCTCAGATCCATATAAAGAGCATTGCTTGGCGAAGCCAAATAACAGCGGTGAAATGACAAATGAGGTCTAG
- Protein Sequence
- MKFPALVWYLQGSSSSSTDSLEPPNNHTRRRQLESSSTCKMAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQPTLRKSRLKRSKSPDLQHHPQTILIQGQNQTSIVSLQQTVDGNYIPVGGNGDDSDVDQEHEHEHVDEHEHEHDHDNDSKPGKICKTEHSVASPASNSSNASNNAAGVSGVTAAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQQIHRLDQSPMHSIGHHHTGDESNSQLVQHIKIMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSVCGPGPGGAGGGIGGGAGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALMNTSGNTTGSIEIIEHSQENSLAKEEHDMLNHPFDLKGALFRSDPYKEHCLAKPNNSGEMTNEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00915253;
- 90% Identity
- iTF_00919908;
- 80% Identity
- iTF_00919908;