Lclr015918.1
Basic Information
- Insect
- Lordiphosa clarofinis
- Gene Symbol
- lolal
- Assembly
- GCA_018904275.1
- Location
- JAEIGQ010000195.1:504917-560068[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.4e-12 1.8e-08 34.1 0.0 1 40 590 630 590 633 0.90 2 4 4.1e-14 9.8e-11 41.3 0.1 2 39 645 682 644 685 0.94 3 4 9.5e-18 2.3e-14 52.9 0.0 1 45 699 744 699 744 0.98 4 4 9.6e-20 2.3e-16 59.3 0.0 1 43 751 794 751 795 0.97
Sequence Information
- Coding Sequence
- ATGTGGAATGAAGACGAGTTTGTGGAACAGAAAGTCAACAGCAAAGATGTGGCTTCAGATGACCAAGAATATGCCGACGTCTATGGTACTGAAACACCTTCAGATGGTACGGCAATGGAAAGCGTCAATAATGGTGCAAAAATAGTGAGACGCATAATAGGCAGCAGCAGCAGCATCTACAGCCTTGAGCCACCCAATAACCACACAAGAAGAAGGAAATTGGAATCCTCTTCCACCTGCAAAATGGCTGCCGTACGTGGGCATCAATATTTCAGCCTACGCTGGAATAACTATCAAAACACAATGACCTCAGTGTTTCAACAGTTGCGCGAGGATCTATCCTTTGTCGATGTGACCTTGTCCTGTGAGCACGGTTCCCTCAAGGCGCACAAGGTCGTGCTGTCCGCCTGTTCAACGTATTTCCAAAAGCTTTTGCTCGAGAACCCCTGCAAACACCCTACAATCATTCTGCCTGCTGATATTATATTCACAGATCTGAAAACCATCATCGATTTTGTTTATCGCGGTGAGATCGATGTCACCGAATCGGAATTACAAGGTCTGCTCCGCACCGCCGAACAACTGAAAATCAAAGGCCTCTGCGAGACAGCTGAGAATGCGGATGATCTGAATGATGCTGCCACTGCAACAATAACTGTATCAGAGAACATACAACATAACGTTGCCCTGAGCGGTCAACTGCTGAGCACAGCGAGCGGCAGCAGCAGCAGTAGCGGTGCTGGCCAACTGCAGGCACAGCAGCAGACACAGTCCGCTGGTCTACAGCCTACGCTACGCAAGTCGCGCCTCAAGCGCTCTAAGTCGCCAGATCTGCAGCACCATCCGCAGACTATACTTATCCAGGGACAAAACCAAACGTCCATTGTGAGTCTGCAGCAGACGGTCGACGGCAATTATATACCAGTCGGCGGCAACGGCGACGACTCGGACGTGGATCAAGAGCACGAACACGAACACGTCGACGAGCACGAACACGATCACGATAGTAAGCCAGGGAAGATCTGCAAGACAGAGCACTCGGTGGCCTCACCAGCGTCCAACTCATCCAACGCCTCGAACAATGCAGCGGGTGTGAGCGGCGTGACAGCAGCAGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGATTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAACATGTCGACCTCTCGTGCAATCCGAGTACGGATACGCGAGACCTATCAAATCCCACCGAAGCGCTCGACATTGACAATCACCTGGCGCAACAAATCCATCGGCTTGATCAATCTCCCATGCATTCGATAGGTCATCATCACACTGGCGATGAGAGCAACTCGCAGCTAGTGCAGCACATCAAAATCATGGAGATTGATCCGAGTCAAATAAAGCATGAGCCAGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCGTCGGGTCATATGGACATGTACAACTCGGATACGAGCGAGGACTCCATGATGATCGCTAATGGCTCTCCGCACGATCAAAAGGAGCCGCACTATACGAATTTGGATCAGCAACACGGCCTGGGTGGCAGCGTTTGCGGCCCTGGCCCAGGTGGTGCTGGTGGTGGCATTGGTGGTGGGGCTGGCTCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCCTCGACCACGCTGTGGCAACGGGCTCACCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAATCATGGAACGAAGATGCATTACAGAATGCCTTGGAGGCATTGCGATCGGGTCAGATATCCGCGAATAAAGCATCGAAAGCCTTTGGCATACCCTCATCGACGCTGTACAAGATAGCGCGTCGGGAGGGCATCCGTTTGGCTGCACCATTTAATGCCGCCCCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTGGAGGCAATTCGAGCGGGTAATACGTCTGTACAGAAAGCGAGTGCCGAGTTTGGCATACCAACAGGAACACTTTACGGACGCTGCAAACGTGAGGGCATTGAATTGTCGCGGTCGAATCCCACACCATGGTCCGAAGATGCCATGAACGAGGCCTTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCGATACACTATAACCTGCCCTATAGCTCGCTGTACGGCCGCTTCAAACGTGGCAAATACGATGTGGTGGCGAATACAAGTGGAGTGGCGCTAATGAATACCTCGGGCAACACAACCGGCAGCATTGAGATTATCGAGCATAGTCAGGAAAATTCGTTATACCCCCTCCCCATTCCCGCACTCAAAAATGCCAGCTTTGACTAA
- Protein Sequence
- MWNEDEFVEQKVNSKDVASDDQEYADVYGTETPSDGTAMESVNNGAKIVRRIIGSSSSIYSLEPPNNHTRRRKLESSSTCKMAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQHNVALSGQLLSTASGSSSSSGAGQLQAQQQTQSAGLQPTLRKSRLKRSKSPDLQHHPQTILIQGQNQTSIVSLQQTVDGNYIPVGGNGDDSDVDQEHEHEHVDEHEHDHDSKPGKICKTEHSVASPASNSSNASNNAAGVSGVTAAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQQIHRLDQSPMHSIGHHHTGDESNSQLVQHIKIMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSVCGPGPGGAGGGIGGGAGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALMNTSGNTTGSIEIIEHSQENSLYPLPIPALKNASFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00915430; iTF_00919750; iTF_00919908;
- 90% Identity
- iTF_00915430;
- 80% Identity
- iTF_00915430;