Lmom013150.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- -
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000083.1:23665-30519[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.62 10.7 0.3 1 23 1174 1197 1174 1197 0.95 2 13 8.8 5e+02 1.5 0.2 1 23 1350 1372 1350 1372 0.91 3 13 0.0002 0.011 16.2 2.7 2 23 1375 1396 1375 1396 0.97 4 13 0.00013 0.0072 16.8 0.9 3 23 1404 1424 1402 1424 0.98 5 13 6.3e-07 3.6e-05 24.0 4.1 2 23 1431 1452 1430 1452 0.97 6 13 5.6 3.2e+02 2.1 0.4 5 23 1465 1483 1462 1483 0.95 7 13 1.5 84 4.0 5.4 3 23 1490 1511 1488 1511 0.93 8 13 0.16 9 7.0 0.2 2 23 1522 1542 1521 1542 0.96 9 13 6.1e-05 0.0034 17.8 0.4 1 19 1548 1566 1548 1570 0.95 10 13 3.8e-05 0.0022 18.4 0.4 1 23 1578 1600 1578 1600 0.98 11 13 0.00011 0.0065 16.9 7.6 1 23 1606 1628 1606 1629 0.96 12 13 0.00022 0.013 16.0 5.9 1 23 1634 1656 1634 1656 0.98 13 13 0.031 1.8 9.2 8.2 1 23 1662 1684 1662 1685 0.95
Sequence Information
- Coding Sequence
- ATGGTTGACAGCGTGCAGTGCCCCGTGTGCACTTTGTATTTGCATGCGGGCATGAATCTATCCGATCATCTGGAGACACATCCCAAGGAGCAGGTCATTAAAGCATTGGTCCAAATGACAATCAGTGGCAATAGTGGCATGGGCAATGCCTTAGCGGCCGCCATGCTAACTGGTGTGGGTGGCGGCGTTAACATAGATAACAATACCACGCCAACTGATGATGTTAAACCCACAATAGAGGAAGCCGCCACTACAGCAAAAGCAACGCCACCGCCGCTATCCTCCTCCTCCGCTCCCTCCTCTGCCAGCAGCAAATTGAATAATCCACCGATTAAGGCACTGAAAAGCGTAACGCCCACGACTGAGGCGCCAGCCAACCCATCCGCAACACCCACCACAAGCAGCATAAATGCTGTGTATCAGCCAACGTTGGCCACAACAGACTATCGCTATGATCAGCAGCAGCCGCCGGTCCAGCACGGATATACGCGTACTTCCAATGCCAACTTGGTGATACCACAGGTGCCCCAGCTGCATTTCCTAGCCAATCAGCAGCAGCAACAACATGCACACTTTGCTCATCAACAGCAAGCCGGGCTGAAATATACCTATGCCAATACGCTGCCACCGCCACCACCATTGCAGCTCTTTGCACAGCAACAGCAGTCGGCCACACAATCCCCAACACATCAAAAACCGCCACCCGCCTATGGAGCCGCCATCAGTCAAATTCGATCTCAGCACAACCAAAACAAACAGCAGCAGCAGCAACATCAACACCTAAACCTGCATCATAATCCAGCCCTGGCACCACCACCACCGACAACAGCTAATGATAAGCCCAACAAAGTCCATACCGAAGTATTTTTGAATCCCCCACCACCACCACCGCCACCGCCCACACCCCCGGCCACACTGTCGCAGCAGTTAACCACATCCTCCACAAGACTGCCCATGCACACATCAATTCCACTCCAAACGTATGCCTCAAATGGCAACAGTTGCTCCTCCACCACGTCGGTTAATGGTCGAGTCAGTCGTCAAACCAATTCACCCTTTGGGGCTTTGCTCAATGCAGCGGCAGCTGCTGCCTGTGCCTCACCCTCCTCGTCCTCGTCAGTGTTGCGTTTTGCCGAATCGCCGGTGGCTCATTACCTGGAGCGTGAGAATGTGATTGAACGCATTTATCAGTCGCCGCCAAGTGTACTCCATATACACGATGAGGATGAAAATGATGACGACGACGACGACGAGGAAGAAGACGAGGAAGAAGCGGAGCATGATGAGCCATCCGAACTGGTGGAGGATGGCGATGATGAGCAAGAGGAGACCAGTTGCAGTCGCAGTCGTAAAAAGTCACGCAAGTCCAAGCCCAAGCGTACAGCCAAGGTTCCCACCTCAGATGAGGAGGAATTCATGAGCTTAGGCAGCAGCGCTGAAAGTGAATCGGAGGGCGAAGAGCCAGAGCAAAGTGTTAATCAACCCGAGTTGCCCACCGCTCCACCGCTGTGCACGGCTCCCTCAACCAGCAGTGCCGCTGCAGCCGCTGAAGCCACTACCGCCGCCTCCTCATCCACCTCAGGCGATTGCCATTCCAATTCCAATTCCATTTCCACTGCCATCAAGTCCAAAAAGAATCGCATTACCGTGCTCAGTGATGTCCCACTGAATATGAACGAGTATTTGGATCTAATGGGCAACATTGTGGCCTCCAGTCGTATAGGGGCGTCACGTCCTTTTGCCGCAGTGGCACCTTTACCTTTGGTGAAAGTGGAAAAGGAGGAGCCACTGGATGACTATGACAATGTCACGGAAACGGAAAGCAGCGCACAGCCCGTGGAGCAGAAGCCCACTTTGGGCACCACCAGCGTCATACGCATGGCCAGCACCAGCATTACCGCTGCCGAGGATCTCACCCAGACATCGGCCATGAAACTGGAGGTAGAGGTTGAGGGCACCACATTAATGCCTCAACGTTTTACGGCTCCGGCCCAGCAGCGTGGTCCCAAGAAATTAGTCATCAAACCAAAGGCCACGGCCACGACGACAACAACACAAAAGACTGACACCCCATCTTCCGGCAGCAACGAGCAGCTGCAAATTAACTCCATATCAAATGTTGTTACGGCATCCACCTCAGAGCTGGTGCAGATCAAGAGCGAGCAGTTGGACTTACCCAACTCAAGCAGCATACTGGAGAAGCATCTGACCACTCGCCAGCTTCACTCAACCATTAATGATGATGATGCTCGTGTGCTGCTCGAGTTTGCCAACTCCAAGCAGCCGCCGCTGGCAGCTGCCTCCAATACCACATTTGTGGTGGGTGCAGCCAGCCCCACCTGTTTCCCCTCGGCTGGTTCCGTTTTCTCCACAAATAAGCAGAAAGCCTGCAAACCGGGCGAGGAATACATACTGCCCGATAATAATCTGGAGGCCGATGAAATTGTGATATCCTCCTCGTCTTCCTATGCTTCATCCTCACAGAGGCAGGCGCAGGCGCAGGCACAGGCTGAACTGGCCGCCTCATCAGTGCCGCCTGTGGCAGCTGGTGCTTCCTTCAATGAATTCAATTTTCTTTATCATCAGTCCACAACGACCACAACGACGTCCTCGGCGGTGGGTGCCTACTTTTCACCTTTTGCCCGACAGCAACAGCAGCAGCAACAGCTTACGCAGCATGCAGCCAGTGAGGCCACCAATGCAGCCACTTTGGCCTCCTCCTCTAGCAACTCCTCGGCCATGGATCATGACTCTATGAATGCCACTTTTCGTGTGGCCAAAACACCTTCGGCGCAGTCCTGGTACCAGCCCGTGGAACAACAGCCAGCAGCAACGGCAACTGGAGTTGCTTCCTCCTCCTCGCACAACCATGAGATGGCCCAACCGACCAACTTTAATGCGGCCTTGGCTGCTGTCGATTGCTGCAGTGTGGCCGTTGACAGTGATGTCAAGTATTTGGATTTGGATGCCTGCAAGCGGGAACAGTTGAGCAATAGCAGTAATTTACCCTCAGCCTCGGCTTCCGCATCCACCACATCTTCCTCGTTTGCGGGAGCTGCCACCGAGAGCAGCTTGGTGGGGGGTCTCAATATACGCACAGATGAGAAAATGCCCGCCAAGGGTGAAATCTCTGAGCAGGAGAGCAACTGCGACATTGAGAATTCTTGGAGTCAATCGATGTATGGCGACATATCACAGCGCTACTTTAGAAACCAGTTTTCGGGCGGCTATCATCCCGACTGGCGACAGGATTACTATCCGTCTCAGGATCTCAGTGCCCAGCAGCGGGAGCTCAAGCGCTTCGACTTTACAGCGGCTGACGAGGAGGCTTCCTGTAGCTCCAAAAAAAGCCATTTGCTGGATGGCCTAGATACACCCACCGCTTTTTCATCTTCATCGGCTTTGCTGGCTGGTCCACCAATAGCCTCCACATCCAGGGCAGCCGCTGAGGCGGCGGCGGCTGTAGCAGCAGCAGCCGCAGCAGCTGCTGTCCAGCGTAAACCGCCGCGTCGCAAAATTTATAAATGTCCGCACTGTGAGGCCATTTTCGAGAAGCTCAAGGATCGCAATGCACACATGATAGGCGAACACAATTATGTGCGTCAAAATCGTCGCCTAATTTGCACTCAGCCGCTGGACAACTCTATGATGCTGCCACCACAGCAGCAACAACAGCCGCCGCAGCTGCTGGTCCAAGTGGATCCCAGCACTGTGAGTGACATTATACAAGAGGATTCCAAGGACGGCATTGTCAAAATCAAGCAGGAGCAGTGCCAGGAAAAGCTTGAATCAGAGCAGCAGCTGCTTACCCAAGCAGAGCTGACAGATGTCAAGAATGCCGAGCTATTGAGCGAAAGTGGTGACATTAAGCCACCCAGTGTGGGTCAAATTGATGAGAAGCCAGCCATAGTGCCGCTGTCTATGACCACGCCTGCCGCCAAGCTGGAAGCTTTATATCGCATGTTAATTGCCTACAACGAATCAAAATTGGGCCAGGAGCGCAACAGCATCAGTGAGCTGGAAAAGAAGGCCATGGAGAAGTCCATATTTCTGTGTTACGTTTGTCGCACCGACTTTCCCTCCGTAAAGCTGTACGATGCCCATCTTACGGAGCATCCCGCCGAGTGTTTTACCTGTGGCAAGAAATTTTATCGCTGGAAGAACTTTTCGTTGCATCTGAAGCGTCATCTGGGCTGGAAGGAATTCGGGTGCTGTGTGTGTGACAAGAAGTTTGTGGTGCGTAGCGCCCTGGTGGAGCACATGCGCATGCATACCGGTCAAACGCCGCTCAAGTGCAAGATATGCGGTAAAAAATTCAAGCGTTACTCCAACTTGACGCAGCATCGCAAGCGGCACACCAAAATGACGGTACGCAAAAAGGAATATGTATGCCATTGCGGCGAAGTGTTGCCATCAAAGGCCCGCTTCCTGTGGCACAAGGAGACGCACGATCTGAAGCCCAAATGTTGTCCCTACTGCTGCGATCGGTTTGTGCATGCCAATTCACTGCGTCGCCATATACGTCTAGCCCATTCGGATAAGTTTGACTATGCCGAGCCCATGGAGTGTCCCATGTGTAAGCAGATTTTTGCCAAGACCTCTATCAAGGCGCATATGGCCACTCACTCAACGGATCCGCAATATGACTGCGCCATTTGCAATAAAAGCTTCTCCACCAAATGGAATCTCAAGATACACTCGTGGGTGCACGCCAATCGTACCGCCAAGCCCTTCAAGTGCGAGTACTGCCCCAAGGCGTTTGTGCGCGAGCTGGACTTTAAGAATCACATAAACGCACATAAGCAGATCAAGCCGTATACCTGCGAGTATTGTGGCTGCAAGTTTATACGCAAGTACAACTATATGCGACATCGGCGCGAGCATCATGGCAACAAGAAGTTCACCTGCGATCAGTGCGACAAGTCCTTCCATCGACACTACTATCTCATCGAGCACCGGCGCATCCACACCGGCGAGCGACCCTTCCACTGTACCATCTGCGGCAAGAGCTCCACCACCAAAACCAATCACAACAAGCATCTAAAGATTCATCACTCGCGCGACCCCTTCACCGTGGAGGTCTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTISGNSGMGNALAAAMLTGVGGGVNIDNNTTPTDDVKPTIEEAATTAKATPPPLSSSSAPSSASSKLNNPPIKALKSVTPTTEAPANPSATPTTSSINAVYQPTLATTDYRYDQQQPPVQHGYTRTSNANLVIPQVPQLHFLANQQQQQHAHFAHQQQAGLKYTYANTLPPPPPLQLFAQQQQSATQSPTHQKPPPAYGAAISQIRSQHNQNKQQQQQHQHLNLHHNPALAPPPPTTANDKPNKVHTEVFLNPPPPPPPPPTPPATLSQQLTTSSTRLPMHTSIPLQTYASNGNSCSSTTSVNGRVSRQTNSPFGALLNAAAAAACASPSSSSSVLRFAESPVAHYLERENVIERIYQSPPSVLHIHDEDENDDDDDDEEEDEEEAEHDEPSELVEDGDDEQEETSCSRSRKKSRKSKPKRTAKVPTSDEEEFMSLGSSAESESEGEEPEQSVNQPELPTAPPLCTAPSTSSAAAAAEATTAASSSTSGDCHSNSNSISTAIKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGASRPFAAVAPLPLVKVEKEEPLDDYDNVTETESSAQPVEQKPTLGTTSVIRMASTSITAAEDLTQTSAMKLEVEVEGTTLMPQRFTAPAQQRGPKKLVIKPKATATTTTTQKTDTPSSGSNEQLQINSISNVVTASTSELVQIKSEQLDLPNSSSILEKHLTTRQLHSTINDDDARVLLEFANSKQPPLAAASNTTFVVGAASPTCFPSAGSVFSTNKQKACKPGEEYILPDNNLEADEIVISSSSSYASSSQRQAQAQAQAELAASSVPPVAAGASFNEFNFLYHQSTTTTTTSSAVGAYFSPFARQQQQQQQLTQHAASEATNAATLASSSSNSSAMDHDSMNATFRVAKTPSAQSWYQPVEQQPAATATGVASSSSHNHEMAQPTNFNAALAAVDCCSVAVDSDVKYLDLDACKREQLSNSSNLPSASASASTTSSSFAGAATESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFSGGYHPDWRQDYYPSQDLSAQQRELKRFDFTAADEEASCSSKKSHLLDGLDTPTAFSSSSALLAGPPIASTSRAAAEAAAAVAAAAAAAAVQRKPPRRKIYKCPHCEAIFEKLKDRNAHMIGEHNYVRQNRRLICTQPLDNSMMLPPQQQQQPPQLLVQVDPSTVSDIIQEDSKDGIVKIKQEQCQEKLESEQQLLTQAELTDVKNAELLSESGDIKPPSVGQIDEKPAIVPLSMTTPAAKLEALYRMLIAYNESKLGQERNSISELEKKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCCVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMTVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00915626;
- 90% Identity
- -
- 80% Identity
- -