Lmom008344.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- -
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000024.1:1318938-1321549[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.11 6 7.6 6.8 3 23 250 270 248 270 0.96 2 12 0.0016 0.088 13.3 0.5 1 23 276 301 276 301 0.94 3 12 0.0017 0.099 13.2 1.0 1 23 308 333 308 333 0.95 4 12 0.00035 0.02 15.4 1.9 1 23 345 367 345 367 0.98 5 12 3.1e-06 0.00017 21.9 0.2 1 23 374 396 374 396 0.98 6 12 0.0088 0.5 11.0 0.1 1 23 402 424 402 424 0.98 7 12 0.0085 0.48 11.0 4.0 1 23 430 453 430 453 0.98 8 12 0.012 0.66 10.6 3.9 1 23 459 481 459 481 0.96 9 12 0.0002 0.011 16.2 3.6 2 23 488 509 487 509 0.96 10 12 0.00016 0.0092 16.4 0.3 1 23 625 648 625 648 0.95 11 12 0.03 1.7 9.3 1.0 1 19 654 672 654 676 0.94 12 12 2.3e-06 0.00013 22.3 4.1 1 23 682 704 682 704 0.99
Sequence Information
- Coding Sequence
- ATGAGTGAGGAATACTCCATTCACTCGGTGTGCCGCATCTGCTTAAATAGTGTGCAAAATAATGCCGCCGTCTACGATCTGTTCCTGGTTCCGGGACTGGCCAAAAAGCTGTGTGTGTGTACCTCTCTAACCGTGGAGCCAAAGGATGGATTTCCAAAAAATCTGTGTGCCAGTTGCTATGCCCGGCTGGATGATATGCAAGAGTTTCAAAAAATGTGTGTGGACTCGGTGCGAAAGTTCCAGGAGATGTTGGCACAGAATATGTTCACTTGCTACTCCGTTTCTTCGAGCAGTTTTGATGTAATGAATGTGGCCAGTCATGAGGGCGATGGCGAGGGAGAGTTGGCGGGTGCCGTCGAGGAGGATCGCATCAACTTTGATCCTCTGCTTAACCATAAAATGGAACTGATTGAGAATGAGGAAGATGTCTTCAAGATGCTCGAACATGTGGACAAGGAGGCGGAGGAGGTGGTTAAGCAGGACGAAGCTCAGGAGTATGGCGGGGACTCGTCGTTGGAGAGTGACAACGACAATGATTATGATGTAGACTTTGATCCTAACATTAGTAGCGATGATGGCGATGATGATATGCCCTTGTCTCAGCGTCTACGCGGAGTTAAGGGCAAACCGTTGGGCCAGAGTGTCAAACAAGACCAGAATTACCTCTCTGACTCTGATGAGGACAGATCCAAGTCGAAAAGAAAGCGTATACCCGCCAATGAACGGCACCTGCATCGCATTATCGATTGTCATATTTGTCACCAGAAGTTCAAGAAGTCCATACGCTATGAGGAGCATATGAAGCATCACAATGATCTGCTGCCTTTTCAGTGTAAAGTGGAGACATGTAGAAAGGGATTTACCACCGCTGGAGGTCTGCGCCTGCACATTGACCATGCCCACACCGAACTATCGGAGATTCATAGCTGTAGCGTTGAGGGATGTGGAAAGACCTTTCCACGCGTACGCCTGCTCACCTTCCATATGCGAAAGGTACACAATATGTCTAAGGCGGCGGCTCCGCCTCGAGATTACCCCTGCTCTGAGTGTGAGAAGGTCTTCCGTTGCCCGATGGCCTTAAAGAAGCATATGTATAAGCACGATGGCAAGGAGCTGCCCTTCCCTTGTAATATTTGTGGCAAACGCTTTGTGATCAATTCCGCTCTCAAAGATCATCTGATGCGACATGCCGGCATTAAGAACTATGTGTGTCCCTATTGCGGTGTGGGCAAGACCACGCGCCAGGAATGGAATACGCATATATTGACGCACACTCAGGAGAAGAAGTTCAAGTGTCATATCTGCGAACATGCCTCGCATAACAAACAGAGTCTGGCCAATCATATTAAGATTGTGCATGAGAAGATAAAGAATTACGCCTGCCAATACTGTGGCAAAACCTTTGGCAAATCGCATGCCTGTAAGATCCATGAGATGACTCACACGGGAGAGAAACGCTGCGAATGCAAGGTCTGCGGCAAGAAGTTCCTCTATCCCAAGAGCCTGACCAAACATTTGAAGACGCATGAGAAACGTGTACTCCGTGCCATTGAGACCTATCGTCAACGTCAGGTGGAGTTGGGCGAGGGTCCGGAGCAGCCGCAACTGGACCCAACCGCGTCAACCTCCCTGGGTATAACTACATTGGTTGAGGGCTTAGCTGGCGGAGATCAAATCATGTCACAAAATGCTGCCGATGAGCTGCTTAAAGTTTGTGCCGAATCTGTGGCCACCATACCTAAAGATCCGCGTCGTGTTCAACGTGTTGACATCTCTCAGTTAGCCGGCACTGCTGTAAACCCCATATCCTCCGTTTCCGTACCCTCCTGGTCGGGTGATCCTCAGGCCAACTTCACAAAAAAAGAGGGCAAACATATCTGCCCCGGCTGTGGTCAAGGCTTCAATAACATTGGCAACATGAAGCGACACTTCAAGATTATCCATGAGAAAGTCAAGGATTTCGCGTGTCGCTTCTGTCCGCGACGCTTTGCCAAGGCCCAGACCCTTAGGCACCACGAATGGATCCATACGGGCGAGAAACCCTTTGAGTGTAAGACTTGTGGCACACATTTCCGTCAGGAGACGGCCCTGAAACGACATCAACGTACGCATGAGAATCGGCCACCTGTCATATCATCCAAGTTCTATGCCGCCCGCGAAGAGTTGGAGGAGCAAGAGCGCTCTAAACGTGAGGCGCGCCGCAAGGCGGAGGCCAAGCGCAAGGAAATCGCCGAGGCAGCCAAAGAGCAGCTATCCTCGTTGCATAAACTGGAAGCCACCGATAGGAATCTGCATTCCTATGATGAGTATCAGGAGGCTGCCGCTGAGCGGGCAGCTGCATCGGCCGAACTGCAAGCCCAACAATTCGAAGAGAATGAGGTTAAACGGCGGGCGGACGAAGATCGACGCAAGATTCAAGAAGCTGCTTACGAGCAGTTGCAGAAACTGCAACAGCAGCAGGAAATCGAAAAGGCCCAGAGCTCTTATGATGGCTACTATGCCCAGAAGGCGAATGCCGAGGGGAGCAGTTTGGAAACACTAAGAATCGATCATGTGTAA
- Protein Sequence
- MSEEYSIHSVCRICLNSVQNNAAVYDLFLVPGLAKKLCVCTSLTVEPKDGFPKNLCASCYARLDDMQEFQKMCVDSVRKFQEMLAQNMFTCYSVSSSSFDVMNVASHEGDGEGELAGAVEEDRINFDPLLNHKMELIENEEDVFKMLEHVDKEAEEVVKQDEAQEYGGDSSLESDNDNDYDVDFDPNISSDDGDDDMPLSQRLRGVKGKPLGQSVKQDQNYLSDSDEDRSKSKRKRIPANERHLHRIIDCHICHQKFKKSIRYEEHMKHHNDLLPFQCKVETCRKGFTTAGGLRLHIDHAHTELSEIHSCSVEGCGKTFPRVRLLTFHMRKVHNMSKAAAPPRDYPCSECEKVFRCPMALKKHMYKHDGKELPFPCNICGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHILTHTQEKKFKCHICEHASHNKQSLANHIKIVHEKIKNYACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYPKSLTKHLKTHEKRVLRAIETYRQRQVELGEGPEQPQLDPTASTSLGITTLVEGLAGGDQIMSQNAADELLKVCAESVATIPKDPRRVQRVDISQLAGTAVNPISSVSVPSWSGDPQANFTKKEGKHICPGCGQGFNNIGNMKRHFKIIHEKVKDFACRFCPRRFAKAQTLRHHEWIHTGEKPFECKTCGTHFRQETALKRHQRTHENRPPVISSKFYAAREELEEQERSKREARRKAEAKRKEIAEAAKEQLSSLHKLEATDRNLHSYDEYQEAAAERAAASAELQAQQFEENEVKRRADEDRRKIQEAAYEQLQKLQQQQEIEKAQSSYDGYYAQKANAEGSSLETLRIDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00575777;
- 90% Identity
- iTF_00916519; iTF_00918404; iTF_00920047; iTF_00917426; iTF_00914716; iTF_00915581;
- 80% Identity
- -