Lcol011321.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- -
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000009.1:1267574-1270197[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 5.9 7.8 5.9 3 23 252 272 250 272 0.96 2 12 0.0021 0.1 13.3 0.5 1 23 278 303 278 303 0.94 3 12 0.0023 0.11 13.2 1.0 1 23 310 335 310 335 0.95 4 12 0.00047 0.023 15.4 1.9 1 23 347 369 347 369 0.98 5 12 4.1e-06 0.0002 21.9 0.2 1 23 376 398 376 398 0.98 6 12 0.012 0.57 11.0 0.1 1 23 404 426 404 426 0.98 7 12 0.011 0.56 11.0 4.0 1 23 432 455 432 455 0.98 8 12 0.015 0.76 10.6 3.9 1 23 461 483 461 483 0.96 9 12 0.00026 0.013 16.2 3.6 2 23 490 511 489 511 0.96 10 12 6.9e-05 0.0034 18.0 0.3 1 23 629 652 629 652 0.96 11 12 0.04 1.9 9.3 1.0 1 19 658 676 658 680 0.94 12 12 3e-06 0.00015 22.3 4.1 1 23 686 708 686 708 0.99
Sequence Information
- Coding Sequence
- ATGAGTGAGGGGAGTCAATACTCCATTCACTCGGTGTGCCGCATCTGCCTAAATAGCCTGCAAGTTGATACCGCCGCCTACAATTTGTTCCTGGTGCCGGGATTGGCCAAGAAGCTGTGCGTGTGCACTTCTCTGTCCGTGGAGCCAAAGGATGGATTCCCTAAGAATCTGTGTGGCAGTTGCTATGCCCGGCTGGATGATATGCATGAGTTTCAAAAGCTGTGCGTGGAATCGGTTCAGAGATTCCAGGATTTAGTGGCCAGCAATGTATTCAGCTGTGAGACGAACTTTGCCGTGCTGGATCCCAGTCAGTCAGTGGTCAGTCATGAGGGCGATGGCGAGGGAGAACTGGCGGGTGCCGTAGAGGAGGACCGCATCAACTTTGATCCTTTGCTGAATCATAAAATGGAGTTGATCGAGAACGAGGAAGATGTCTTTAAGATGCTCGAGCATGTGGACAAGGAGGCGGAGGAGGTGGCGAAGCAGGACGAAGCACAGGAGTATGGCGGGGACTCGTCGATGGAAAGTGGCAACGACAATGATTATGATGTCGACTTTGAGCCCAACAACAGCAGCGATGACGGCGATGATGATATGCCCCTGTCTCAACGTCTGCGCGGGGTTAGGTCCAAACCAAAATCGCAGAGTGTCAAACAAGAGGAAGATTCCCTTTCTGACTCTGATGAGGACAGATCCAAGTCGAAGAGAAAGCGTATTCCGGCCAACGAACGTCATCTGCATCGCATTATCGATTGCCACATTTGCCACCAGAAGTTCAAGAAGGCCATACGTTATGAGGAGCACATGAAGCATCACAATGATCTGCTGCCTTTTCAGTGTAAGGTGGAGACTTGTAGGAAGGGTTTCACCACGGCTGGAGGTCTGCGCCTGCACATTGACCATGCCCACACCGAACTATCCGAAATTCATAGCTGTAGTGTGGAGGGATGTGGCAAGACCTTTCCTCGCGTACGCCTGCTCACCTTCCATATGCGAAAGGTTCATAACATGTCCAAGGCAGCAGCTCCGCCTCGAGATTACCCCTGCTCCGAGTGTGAGAAGGTTTTCCGCTGCCCGATGGCCTTGAAGAAGCATATGTATAAGCACGATGGCAAGGAGCTGCCCTTCCCCTGCAATATTTGTGGTAAACGCTTTGTGATCAATTCCGCTCTCAAAGATCATCTGATGCGGCATGCGGGCATCAAGAACTATGTGTGTCCATATTGTGGTGTGGGCAAAACCACGCGCCAGGAATGGAATACGCACATATTGACGCACACCCAGGAGAAGAAGTTCAAGTGCCATATCTGCGAGCACGCCTCGCACAACAAACAGAGTCTGGCTAATCACATCAAGATTGTGCATGAGAAGATCAAGAACTATGCGTGTCAATATTGCGGCAAAACCTTTGGCAAGTCGCACGCCTGCAAAATCCATGAGATGACCCACACGGGGGAGAAGCGCTGCGAGTGCAAGGTCTGCGGCAAGAAGTTTCTCTATCCCAAGAGTCTGACCAAACATTTGAAGACGCATGAGAAACGAGTACTCCGTGCCATTGAGACGTATCGCCAACGTCAGGTGGAAATGGGCGAAGGTCCGGGCGATCCGCAACTAGAACCTTCAGCGTCCACTTCCCTCGGCCTCGGCATATCTACATTGGTTGAGGGTGCAGCTGGCGGGGATCAAGTCATGTCACAAAATGCTGCCGATGAGCTGCTCAAGGTTTGTGCCGAGTCTGTAGCCACCATACCCAAAGATCCGCGTCGTGTTCAACGCGTAGACATCTCTCAGTTAGCCGGCACTGCAGTAAACCCCATATCCTCCGTTTCGGTTCCCTCCTGGACGGGTGACACGCAGGCCAACTTTACCAAGAAGGAGGGAAAACATATTTGCCCCGGTTGTGGTCAAGGCTTCAATAACATTGGCAACATGAAGCGGCACTACAAGATTATCCACGAGAAAGTCAAGGATTTCGCCTGTCGCTTCTGCCCTCGACGCTTTGCCAAGGCTCAGACCCTGAGGCACCACGAATGGATCCACACGGGCGAGAAACCGTTTGAGTGTAAGACTTGTGGCACACATTTCCGCCAGGAGACGGCCCTGAAACGACATCAGCGCACGCACGAGAATCGTCCACCTGTTATATCCTCAAAGTTCTATGCAGCCCGCGAAGAGTTGGAGGAGCAGGAGCGCTCAAAGCGTGAGGCGCGACGCAAGGCGGAGGCCAAGCGCAAGGAAATAGCCGAGGCAGCCAAAGAGCAGCTATCCTCGTTGCACAAACTGGAGGCCACCGACAGGAACCTGCATTCCTATGACGAGTATCAGGAAGCTGCCGCAGAGCGAGCAGCTGCATCGGCCGAACTGCAAGCCCAGCAATTTGAAGAGAATGAGGTGAAGCGGCGGGCAGATGAAGAACGCCGTAAAATTCAAGAAGCGGCTTTCGACCAGCTGCAGAAACTGCAACAGCAGCAGGAAATCGAAAAGGCCCAGAGCTCCTATGATGGCTACTATGCCCAGAAGGCGAATGCCGAGGGCAGCAGTTTGGATGCCCTAAGAATCGATCATGTATAA
- Protein Sequence
- MSEGSQYSIHSVCRICLNSLQVDTAAYNLFLVPGLAKKLCVCTSLSVEPKDGFPKNLCGSCYARLDDMHEFQKLCVESVQRFQDLVASNVFSCETNFAVLDPSQSVVSHEGDGEGELAGAVEEDRINFDPLLNHKMELIENEEDVFKMLEHVDKEAEEVAKQDEAQEYGGDSSMESGNDNDYDVDFEPNNSSDDGDDDMPLSQRLRGVRSKPKSQSVKQEEDSLSDSDEDRSKSKRKRIPANERHLHRIIDCHICHQKFKKAIRYEEHMKHHNDLLPFQCKVETCRKGFTTAGGLRLHIDHAHTELSEIHSCSVEGCGKTFPRVRLLTFHMRKVHNMSKAAAPPRDYPCSECEKVFRCPMALKKHMYKHDGKELPFPCNICGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHILTHTQEKKFKCHICEHASHNKQSLANHIKIVHEKIKNYACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYPKSLTKHLKTHEKRVLRAIETYRQRQVEMGEGPGDPQLEPSASTSLGLGISTLVEGAAGGDQVMSQNAADELLKVCAESVATIPKDPRRVQRVDISQLAGTAVNPISSVSVPSWTGDTQANFTKKEGKHICPGCGQGFNNIGNMKRHYKIIHEKVKDFACRFCPRRFAKAQTLRHHEWIHTGEKPFECKTCGTHFRQETALKRHQRTHENRPPVISSKFYAAREELEEQERSKREARRKAEAKRKEIAEAAKEQLSSLHKLEATDRNLHSYDEYQEAAAERAAASAELQAQQFEENEVKRRADEERRKIQEAAFDQLQKLQQQQEIEKAQSSYDGYYAQKANAEGSSLDALRIDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00575777;
- 90% Identity
- iTF_00919289;
- 80% Identity
- -