Lmom011234.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa mommai
Gene Symbol
-
Assembly
GCA_018904225.1
Location
JAEIFT010000157.1:439270-443871[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0032 0.18 12.4 1.1 1 23 194 216 194 216 0.96
2 25 0.043 2.5 8.8 3.2 1 23 222 244 222 244 0.97
3 25 6.1 3.4e+02 2.0 2.5 2 23 276 297 275 297 0.94
4 25 0.034 1.9 9.1 3.0 1 23 369 392 369 392 0.94
5 25 3.1 1.8e+02 2.9 3.9 2 23 403 426 402 426 0.92
6 25 0.15 8.7 7.1 2.1 3 23 470 490 468 490 0.96
7 25 0.015 0.85 10.2 2.2 1 23 565 588 565 588 0.96
8 25 0.015 0.85 10.2 0.1 1 22 597 618 597 618 0.96
9 25 0.26 15 6.3 5.9 1 23 627 649 627 650 0.96
10 25 0.0024 0.14 12.7 0.3 2 23 683 704 682 704 0.97
11 25 4.7e-06 0.00026 21.3 4.2 1 23 712 734 712 734 0.99
12 25 0.047 2.7 8.7 3.8 1 23 875 898 875 898 0.96
13 25 0.049 2.8 8.6 0.3 2 21 908 927 907 928 0.92
14 25 0.017 0.94 10.1 1.3 1 23 937 960 937 960 0.96
15 25 0.00011 0.0061 17.0 4.0 2 23 973 994 972 994 0.97
16 25 0.0012 0.071 13.6 2.5 1 23 1001 1023 1001 1023 0.98
17 25 0.033 1.9 9.2 0.3 3 23 1051 1072 1050 1072 0.94
18 25 0.013 0.76 10.4 4.7 1 23 1119 1142 1119 1142 0.96
19 25 0.13 7.3 7.3 0.5 1 23 1179 1202 1179 1202 0.97
20 25 8.8e-05 0.005 17.3 1.8 1 23 1230 1253 1230 1253 0.98
21 25 7e-06 0.0004 20.7 0.2 2 23 1286 1307 1285 1307 0.95
22 25 0.00028 0.016 15.7 3.1 1 23 1313 1335 1313 1335 0.99
23 25 2.7e-06 0.00016 22.0 2.0 1 23 1341 1363 1341 1363 0.97
24 25 2.4e-07 1.4e-05 25.3 2.4 1 23 1369 1391 1369 1391 0.99
25 25 0.00091 0.051 14.1 0.1 1 21 1397 1417 1397 1421 0.91

Sequence Information

Coding Sequence
ATGCTGCCCACGGATATATGCCGTACGTGTGGACAGCAAAACACAAATTTCTTGCCGCTCTCCAGCTGCTTGGAGAAGCTACAAGAATTGACACAAATTCCGCTGCAGGAGGAGAGCGATTATGATAATTTGCCTCAACAAGTGTGTGGCGATTGTTTGGCCAGATTGGAGAATGCCTATGCCTTTGTCGAACAGGCAAGAAAAGTGAACGGCGAGCTAATGGTTAGACTAAGGCAGTGCCTGGAGGAGGCACCCATTGATTTGCCCCTGGAGCAAATCAAAATGGAAATGGAGGAGGATGAGCAGGAGGAGGAGGAGAAAGACATTAAATGGCAGCCGGACTCGTCGAGTGAGGAAAGTCAAGCGGACGCAGGCGATTTAAATTGGTCTGATGAAAATGATAAGAAAGAAGCTAAACCGTATCAGCTTAGAAGCAATCTACGCAAGATAAAGCCAGCCCTAGACAGCGAGGAGGAGGAGGAGCCAAGCCATGAGAATCAGCTGTCTCTGCCGCCCAAGCGTGGGCGTGGACGCCCTCCTCGTCTGGCCAAAAGACTAACCCTTAATTCCGAGGGTCGTCATGCCTGTCAAGTGTGTGGAAAGTCTTTCTCTTGGTTTAGAGATATGCAGCGACATGCCCGCATTCATTTTGAGGTGGCCTCCCACGTGTGTCCCAGCTGTGGCAAGAGCTTTCTGCGTAAGGATAAATACCAATTCCATTTAAGAAGCCATGAGCGACGCCAAGCCAAATCTCAGTCATTGACTCTCAGCAAGGAATGGAAATTTGCGGAGCGTTTGTATAGCTCGGGAAGATTCAAATGCTTGGAGTGCAAATTGTGTGGTCTGAATTGTTTAAAAGTTCACGAATTACGAACACATTTGGAGAGTCATGCCCAGGTGGAAACCCTGGCCCAACTCTCGGTGGAACAGGAGGTGATCAAAGAACTATATCCCAGTCATCAAATGGAACAGTTGCCGCAAATAAAGGAACAGATCTGTGAAGAGCTCACCCAGGGACATCTGCAGCAATTTTGTTCTTTGGTCAATTTCTATGGCTATGAGTTGTCCTTAAGTGATTCGGATGAGGAATTGGCGGAACCAAAATATCAATGTTTAACCTGCAATTTAAGCTTTAATCGCAAACATCGCATGATGCAGCATACCCTGGAGGAACATACTCAAACTAACGCGGTTTTACCACAATTACGCTGTAATCTCTGCCAGATTGGCTTTGTATGTCCTAAGCTATTTGAACAACACCAGCGTACCCAATGTCATTCTAAATTTAAACGTTATCACTGCCGGAATTGCCCGGGCAAATTTATGTGGTTGGAGAATCTAGAAAGACATAGCTGTTCCCAGGCAGCTAGCAAAGATTCCGCGTTGGCTTCTCTAAAGCGAATCCACTGCTGCCTCTGCGATACTCAGTTGTCCAGTCTGGTCCAACTAAGAGCCCACTTGCTTAGTCATCGGGATGGCTGCACCGGCATTGATCCTCAACATAATTCCACCTTCTTTCGTTGCTATTATCCCAAGGGATTGGCCTGTACTCAGGCTGAGTTGATAGCCCGCATTGCGGGAGACTTCGAGGCCCTGGATTATGGTCGCTACTATAATGCTTGCTCTGGCAGTGGCCAGGAAATGGATCTCTTTGACTCGGATTCAGATGAAAGTGAAAAAAGCACCCAGCAGCACATTTGCTCGTTGTGTGGAGAGATTACCAAGAGATTGTGCCAACTTTTGCAGCATCAGCAAAGTGCTCACTCTCAAGAGGACATTCCATTGCCCTATACTTGTGAGGATTGTGCCAAGGGGTTTGTATCAGATTTGCTGCTGCAACAGCATAGACGTCGCAATTGTAACAAGAAACATGCAAAATATCAGTGCCAGCTGTGCCAGCAGCATTTTGTGTGGCAGGTAAACTATGAGCAGCATCATAGAGTGCATCATCAAGAAAAGAAGCAGGCCGAACAGGAGCAGGAACAGGATCAAAAGCCAGAGCAGGGTGAGCTGACTAGCAAACGGAAGAACTCTGCAACCAAACTGCAATGCGACGAATGTGAAAAGGTCTTCATATGGGTCAAGGATCTTAATCGTCACAAGCGCATGCATCAGCCCCAGACGGCAGCCCAATACGAGTGTCCGCACTGTGATCGAAAGTTCCATCGCAAAGATGGCCTCAAGTCACACCTAAGAATACACAGCGATCAACAGCATGAGTTGGAGAAAACAGAAGAACACTCTCCGCCAGCTCAGCCTCCCATAAATCTACCCCAACTGGGTCGTCCACATGGTTGCAAGCAAATCCAATGCATGATCTGTCTGTCGCAACACTCTAAAATAAGGGATCTTCGTAGTCATCTCAGTTCGCATCAGTTTGGAGTGAACCTGCCTTCCGAAAAGGAATCAACCAGCATCTCTCGCTCGTTATATGGCGAATTGAGTGTTCCTTTGGCCCAAGATCAACTCATTGAAAGAATCAAAAGTGATGTAGCCAAGGGCTTGGAGCTAGAAAGATTTATATCCATTACCAATGAGGCGGGTATGGAGCTCAGTTTGGATAGCAGCGAAACAGAAACAGATTCAGAGGAGGAAACCAAAGCTGACGAACAGGAAACATCATATGAATGCAATCTCTGTCATTTAAAGATGAAGCGAAAATATCAATTATATAACCATCAGATGGAGCAACATAACAGGCCGGAGGAAGAGGGTTCAAGTGTTTGCCCACACTGTCAGGCCCGGTTTGTAAGTGATTTGCTGCTGGAGCATCATCTGAGAAGCTTGTGCCGGAATACACAGAAGCGTTTCCAGTGTCGCAAATGTCCCCTACGCTTCCGCTGGCGAGAGAATCTCAAATTGCATACTAATCTCTTACATCAGCCCAGGGAAACGGGCGAGGAGGCGCCCGAGTTGACTTGTCAGCAATGCAATCGTAGCTTTAAAATGCAAAAGGATCTCACCCGTCATATACACATGCATGGCCAGGAGTCGAGTATCTATCATTGTCGCTGGTGTGCACGACGTTTCTATCGCAAAGCCAATCTCCTGCAACATATCGAACGTCATGGCATAGCAGCCAATCAGCTGCCCTATGCCGAGGCCTTGCTTAATGCATATGTCCAGCCCAATGGTCCGAAAGTGATTCTATGCAAGATGTGTGAAATGAGCTTTAGCAGTATACAAGCTCTGCGCCTCCATTTGGGCAGTAATCATCAACTTGCCATAGAATTGGCCACCATGCAGAACTATTCCATTACCAATCAGGCGGGATACGAACTACATCTAGAGGACTCGGAAACGGATGAGGCAGAGGGTGTCGAAGTCATTAAAGCGGAGGGTACACCACCGTTCTACACCTGCAGCATGTGTCAACTGAGATGTGTGAGAAAATATGAACTCCACCAGCATCAGCAGGCCATGCATCGTGTGGAAAAGGTACCTCAGGGTTGTGATCAATGCATCTTCAAGAGCGTTTCGTCGGATCTGATTGCCCATCATAAGCGTGTGCAGTGCGGCAATCAGGAGAAACAATTCAAGTGTGTTAAATGCGCCTACAAATTCATGTGGGAATCCAATCTGTTGCTACACATGCAAATCCAGCATGGTAAGGGAGAGGAGGAAGAACCACCACCAGAGCAAACAAATACCAACCAGGACGATGCCAAAGTAGCAAACCATCAAATCTTCCAGTGCGCCCTGTGTCCGCGCAAATACAATCGTAAGGATCGTCTCACAGCACACATGAAGAAATTCCATAATCCTGCTTTGGGTAGCAGCATTATACAGGCTCCCCCTGCTACTGCTGCACCCAGCTCTACATCGACTTCACCAGCTAAACAGCCAAAATGTTTTCTTTGCGCTTTCTGCGGCAAAGCTGTCAGTTCCTCCTCAAATCTTATTATTCACATGCGACGCCATACTGGTGAGAAACCTTTCAAGTGTGATTTTTGTGACATGGCCTTTCCCCGATCCTCGGATCTTCAATGTCATCGGCGCACTCACACCGGCGAACGTCCGCATGTTTGCACCGTCTGTCAGAAGGGATTCGCCCGTTCCTACAAACTGCAGCAACATATGCGTATACACAATGGCGAACGACCCTACAAATGTACCTATTGCGAGAAGAGTTTTACTCAATCCAATGATTTGACATTACACATACGTCGCCACACGGGCGAACGTCCATATCAGTGTGGTATTTGTGGTGAACGGTTTATCCAGGGCACAGCATTAAAGAATCATCGCTTGCAGCAGGGTCACTATGAGGAGGGCAGCCAGGGTGCAGGTGAGCCGCCTCCGAGACGCACAGTTCTTGAGCAGTTTAAAGGAAAGTGA
Protein Sequence
MLPTDICRTCGQQNTNFLPLSSCLEKLQELTQIPLQEESDYDNLPQQVCGDCLARLENAYAFVEQARKVNGELMVRLRQCLEEAPIDLPLEQIKMEMEEDEQEEEEKDIKWQPDSSSEESQADAGDLNWSDENDKKEAKPYQLRSNLRKIKPALDSEEEEEPSHENQLSLPPKRGRGRPPRLAKRLTLNSEGRHACQVCGKSFSWFRDMQRHARIHFEVASHVCPSCGKSFLRKDKYQFHLRSHERRQAKSQSLTLSKEWKFAERLYSSGRFKCLECKLCGLNCLKVHELRTHLESHAQVETLAQLSVEQEVIKELYPSHQMEQLPQIKEQICEELTQGHLQQFCSLVNFYGYELSLSDSDEELAEPKYQCLTCNLSFNRKHRMMQHTLEEHTQTNAVLPQLRCNLCQIGFVCPKLFEQHQRTQCHSKFKRYHCRNCPGKFMWLENLERHSCSQAASKDSALASLKRIHCCLCDTQLSSLVQLRAHLLSHRDGCTGIDPQHNSTFFRCYYPKGLACTQAELIARIAGDFEALDYGRYYNACSGSGQEMDLFDSDSDESEKSTQQHICSLCGEITKRLCQLLQHQQSAHSQEDIPLPYTCEDCAKGFVSDLLLQQHRRRNCNKKHAKYQCQLCQQHFVWQVNYEQHHRVHHQEKKQAEQEQEQDQKPEQGELTSKRKNSATKLQCDECEKVFIWVKDLNRHKRMHQPQTAAQYECPHCDRKFHRKDGLKSHLRIHSDQQHELEKTEEHSPPAQPPINLPQLGRPHGCKQIQCMICLSQHSKIRDLRSHLSSHQFGVNLPSEKESTSISRSLYGELSVPLAQDQLIERIKSDVAKGLELERFISITNEAGMELSLDSSETETDSEEETKADEQETSYECNLCHLKMKRKYQLYNHQMEQHNRPEEEGSSVCPHCQARFVSDLLLEHHLRSLCRNTQKRFQCRKCPLRFRWRENLKLHTNLLHQPRETGEEAPELTCQQCNRSFKMQKDLTRHIHMHGQESSIYHCRWCARRFYRKANLLQHIERHGIAANQLPYAEALLNAYVQPNGPKVILCKMCEMSFSSIQALRLHLGSNHQLAIELATMQNYSITNQAGYELHLEDSETDEAEGVEVIKAEGTPPFYTCSMCQLRCVRKYELHQHQQAMHRVEKVPQGCDQCIFKSVSSDLIAHHKRVQCGNQEKQFKCVKCAYKFMWESNLLLHMQIQHGKGEEEEPPPEQTNTNQDDAKVANHQIFQCALCPRKYNRKDRLTAHMKKFHNPALGSSIIQAPPATAAPSSTSTSPAKQPKCFLCAFCGKAVSSSSNLIIHMRRHTGEKPFKCDFCDMAFPRSSDLQCHRRTHTGERPHVCTVCQKGFARSYKLQQHMRIHNGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYQCGICGERFIQGTALKNHRLQQGHYEEGSQGAGEPPPRRTVLEQFKGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00919976;
90% Identity
-
80% Identity
-