Lmom000729.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- bab1
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000433.1:139156-143864[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.6e-18 1.3e-14 53.7 0.0 1 43 55 98 55 100 0.95 2 3 3.9 9e+03 -3.5 0.8 6 13 220 227 218 230 0.82 3 3 3.4 7.9e+03 -3.3 0.1 4 11 235 242 235 242 0.84
Sequence Information
- Coding Sequence
- ATGATGGAGAACTCGCATGCTTGGATGGGCGCCACCGGTTCCACATTGGCAGCAGACAGCTATCAATATCAATTGCAGTCCATGTGGCAAAAGTGCTGGAACACAAATCAAAATCTAATGCATCATATGCGCTTCCGTGAGCGTGGACCATTGAAATCCTGGCGACCCGAGACCATGGCCGAGGCCATATTCAGTGTGCTCAAGGAGGGACTCTCATTGTCGCAGGCGGCACGCAAATATGACATACCGTATCCCACCTTTGTGCTCTATGCGAATCGTGTGCATAATATGCTGGGGCCCTCGATCGATGGTGGACCCGATTTGAGGCCCAAAGGGCGTGGCCGACCGCAGCGCATATTGCTGGGCATTTGGCCGGATGAGCATATCAAGGGTGTGATCAAGACGGTGGTGTTTCGCGATACCAAGGATATGACAATGAAGGACGACAGTCTGGGTACGCATATGCCGCCCTACGGCCGTCATTCGCCCGTATTTCCCTTTCAGGACATGACGCTAGGCTATCCAGGCGCTAGTGGCGGCGGCGGTATGCCGGGCAGCTCTTTGGCCTGTCCCAATGGCATGGGCAGTGCGGGTATGGCGGGTCCGGGCGGCGGAGCGGCTGGTGGTGGAGTCGATCAGCCCATGTCACAGGAGACGGCTGCCGCTGTGGCCGCGGTGGCGCACAATATACGCCAGCAGATGCAAATGGCTGCCGCCGTGCAGCATCAGCACGGGGAGGCGGGACCGCCTCCAGGACTTTCCATGCCTACGGCTGCCATGGCCGCCTCCACCTCCTCCTCCTCCTCCCAGCAGCAGCAGCAACACCAGCAGGATAAGTCCAAGCCCAAGTGTAGTCCTTTAAGAAGCGAAACGCCTCATTTGCATTCACCTTTGGCGGATTTGGGCCTAGAGATGAGCAGCTATAAACGAGAATACTCACCCTCCCGTCTCTTTGCCGAGGATCTGGCTGAACTAGTGGGGGCCAGTGTGTCTTCCTCCTCCTCGGCCACCACCACTGTTACCACAGCAGCTGCTGCTGCAGCTGGAACTGGAACAGCTGGCACAGACATCAGCTCCAGCAGCAGCAGCGCTGGCATTAAGATAGAACCCATTACCACCACCAGCGAGTAG
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDMTMKDDSLGTHMPPYGRHSPVFPFQDMTLGYPGASGGGGMPGSSLACPNGMGSAGMAGPGGGAAGGGVDQPMSQETAAAVAAVAHNIRQQMQMAAAVQHQHGEAGPPPGLSMPTAAMAASTSSSSSQQQQQHQQDKSKPKCSPLRSETPHLHSPLADLGLEMSSYKREYSPSRLFAEDLAELVGASVSSSSSATTTVTTAAAAAAGTGTAGTDISSSSSSAGIKIEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00915258;
- 90% Identity
- -
- 80% Identity
- -