Lclr009605.1
Basic Information
- Insect
- Lordiphosa clarofinis
- Gene Symbol
- bab1
- Assembly
- GCA_018904275.1
- Location
- JAEIGQ010000010.1:4660873-4662450[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-18 1.4e-14 53.6 0.0 1 43 55 98 55 100 0.95 2 2 2.4 5.8e+03 -2.8 0.3 6 13 218 225 213 228 0.77
Sequence Information
- Coding Sequence
- ATGATGGAAAACTCGCATGCTTGGATGGGCGCCACCGGCTCCACATTGGCAGCAGACAGCTATCAGTATCAATTGCAGTCCATGTGGCAAAAGTGTTGGAACACGAACCAAAATCTTATGCATCATATGCGCTTCCGTGAGCGCGGTCCATTGAAGTCCTGGCGACCCGAGACCATGGCCGAGGCCATTTTCAGTGTTCTGAAGGAGGGACTCTCGCTGTCGCAGGCCGCCCGGAAGTATGACATACCGTATCCCACCTTTGTGCTCTATGCGAATCGTGTGCATAATATGCTGGGTCCTTCGATCGATGGTGGACCCGATTTGAGACCCAAAGGACGTGGACGACCGCAACGCATTTTGCTGGGCATCTGGCCGGATGAGCATATCAAGGGTGTGATCAAGACGGTGGTGTTTCGCGATGCCAAGGACATGACGATGAAGGACGACAGTCTGGGGTCACATATGCCGCCCTATGGGCGTCATTCGCCCGTATTTCCCTTGCAGGACATGACGCTAGGCTATCCAGGCGCTAGTGGCGGCGGCATGCCGGGCAGCTCCTTAGCCTGTCCGAATGGCATGGGCAGTGCCGGCGTGGCTGGACCTGGCGGCGCCGCGGGTGGTGGGGTCGAGCAGCCCATGTCCCAGGAGACAGCGGCAGCTGTGGCCGCGGTGGCGCACAACATACGCCAGCAGATGCAAATGGCTGTTGCCGTGCAGCATCAGCACGGGGAGGCGGGGCCGCCTCCAGGACTGTTCAATTTACCGCCACATTTGGCTGCCGGTCCAGGGGGCCGGGGGAGCATATCGCCAGCTTCCATGCCTACGGCTGCCAGTGCCGCCTCCTCCCAGCAGCAGCAGCAGGACAAGTCCAAGCCCAAGTGTAGTCCTTTAAGAAGCGAAACCCCACATTTGCATTCTCCTTTAGCGGATTTGGGTCTAGAGATGAGCAGCTACAAAAGAGATTACTCACCCTCACGTCTGTTTGCCGACGATCTGGCTGAGCTAGTGGGAGCCAGTGTGTCTTCCTCCTCCTCGGCCACCACCACAGTAACCCCAGCAGCCCCGGCAGCTGCAGGTGGCCCTGGCACCGACATCAGTTCCAGCAGCAGCAGCGCTGGCATCAAAGTGGAACCCATTACCACCACCAGCGAGTAG
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDMTMKDDSLGSHMPPYGRHSPVFPLQDMTLGYPGASGGGMPGSSLACPNGMGSAGVAGPGGAAGGGVEQPMSQETAAAVAAVAHNIRQQMQMAVAVQHQHGEAGPPPGLFNLPPHLAAGPGGRGSISPASMPTAASAASSQQQQQDKSKPKCSPLRSETPHLHSPLADLGLEMSSYKRDYSPSRLFADDLAELVGASVSSSSSATTTVTPAAPAAAGGPGTDISSSSSSAGIKVEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00918976;
- 90% Identity
- -
- 80% Identity
- -