Basic Information

Insect: Lordiphosa magnipectinata
Gene Symbol: -
Assembly: GCA_018904285.1
Location: JBAMBO010002061.1:126320-147817[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.16 12 7.3 0.5 1 23 656 678 656 678 0.96

2 7 2.3e-05 0.0017 19.3 1.1 1 23 684 706 684 706 0.98

3 7 8.5e-06 0.00064 20.7 0.2 1 23 712 734 712 734 0.98

4 7 4.7e-06 0.00035 21.5 1.4 1 23 740 762 740 762 0.98

5 7 0.00025 0.019 16.1 2.2 1 23 768 790 768 790 0.98

6 7 6.9e-06 0.00052 21.0 2.4 3 23 798 818 796 818 0.94

7 7 5.7e-05 0.0042 18.1 1.0 1 23 824 847 824 847 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.16	12	7.3	0.5	1	23	656	678	656	678	0.96
2	7	2.3e-05	0.0017	19.3	1.1	1	23	684	706	684	706	0.98
3	7	8.5e-06	0.00064	20.7	0.2	1	23	712	734	712	734	0.98
4	7	4.7e-06	0.00035	21.5	1.4	1	23	740	762	740	762	0.98
5	7	0.00025	0.019	16.1	2.2	1	23	768	790	768	790	0.98
6	7	6.9e-06	0.00052	21.0	2.4	3	23	798	818	796	818	0.94
7	7	5.7e-05	0.0042	18.1	1.0	1	23	824	847	824	847	0.98

Sequence Information

Coding Sequence: ATGTTGCCACTCCAGCAACAGTCGGAGCAAGTGCATCCCCACACCCACCAGCCGTTCAATTGGCAATTGGAGGACTATGCATACTTTCGTAAGTGTGGAGAAATTACCACCTCACCGGATAGGCAATGCTTTGGCTTCAATTGCGCCTTCTGTCCGGCCATTTGTCTACAATTCTCCGTCTTCATGGATCATATACGTGGACAGCATTTGCACGATGTGCGACGACGATACGAGGGTGCGGAGGAGAAAATCGAACAAACAACGCAAACGGATTTAATGATAATGGAAATGGACTGTCCCGATATGTATCACCTAGACCCACCAGAACCACATCAGGCCACaacaaataaaagtaaaatatgTAGACAAATGGAGGACACCGACACGCAACGTTTGGGTGTGGACCTACAGCTGGTGAATATTGCGACGACCTCCccaatgcagcagcagcagcagcagcagctagaAGGGCTAGACAATGCAGTAACACCCGAAATAGATTTGGTTTATGTCATGGAAAACCCCTTACCACCCTCACCACCACTCTCCGCGGACATTTCCGCTGACGAACAGAGTCAGAGTTGTGTGCTGCCTTTGCTGGATCCATTTGAAGTGCTGCAGGCGGGCATAACTACCACTCCTTTGACTGGGCAACCCCACAAAGGGTTGACGTCTGCTCCACCTCCACGATATGAGACACGACGCGTGGCCATGCAACGCAAACTGCAAAAAGAGGAACAACATCAACAACTGGAGGAGAACGTAATGCAACTAACACCCCCAGCCACACCGCCCACCGAAGTTTCGCCCACTtcacccagcagcagcagcagcgtgaCCAGCGTTGACTTCAAATTGCGCTCGCGTCGCGAATTGGAACGGAATCGGGAATTTGTTAGCTCTCTGCTCCAGAGCTATGAACGTATGGAAAAATTATGGAATCCCAAGCATCCCGACTATAAATACAATACCAAGCGTAGTGTTTATGGTGAATTGGCTGCCCCATTGGAGAATTCATTTCAAATGCAACTCACGGGAGCTGAAATCTTTGCTGTACTGAAAGAATTACGTGGACGCTATCGTCGAGAGCTAAGCAAACTGAACTCTTTGGGAGGGAAGTACAAGTCCAGACTGTGGTATTTTGATAAAATGCATTTCCTACGCGGTGTTATCGAGCACAAAAGGGCAGAGAGGGAGGCCAAGATCTCCAATGACAGCACTGAAAGTGAGAAATCCTGCGAAACGGATGCCGAATCCTCTAGCAAATCTGCACAATATCGTGAAGTTCTCAGCTACATACTCGATGCATTCAAGCGACAGGAGTGTCTCTGGAATCCACAACACTATGACTATGCCACCTGTACCAAAAAGGATTTATACCGTGACATCTCCATACAACTTCAAGAAGATCTCAACTATGAAATGAATGGCGATGAATGCTACAAGGAGATACAAAAGCTGAGAACACGTTATCGCAAGGAACTACGCATGGTGATCAAACATAAGGGCTTGTATTTGCCCAAACTTTGGTGCTATGATTATTTGGAATTTCTACACCCGATATTGCAGCAGCAGATCTTTAATAAAATCAGTAAGAAAGTGGGCATAGTTGAAACCCAGCAGAAAACCAAATTTATCAACGCCCCCGTCATAGAGTTTGCCTCAACGGACGATCAGTTGCAATTTGTGGAAATATATAGAAACTACTCAGCTCTGTGGGATGTAGATCACCCCGACTTTCGTTCCAATGCCTATCGAAGTCAGGCTCTTAATCAAATGCTGGATGAGCTGAATACCACTTTCCATAGTGAATATACCGCCGAACAGTTGGAGAAGACTTTGTTTGAGCTGCGTAAGAATTTCTCTGCCCAAAAAAGGAAAATTCTAGCCAATTCCAGTGCCTCAAGCAGTATACCTCTATTACACGCCAAGCTGGCTCAGTTCTTGGAACAGAATTTGGGACCTTTTTCCTGTGATGTTTGCTCTCAGCTGATCAAAACCAGCGACCAGTACAAAGTTCATCGTTCAGCTCACGATGGAACACAGCCCTTTATATGTACACTCTGTGGCAAGGGTTTCCAAATGCCCTGCAATTTGACTGTCCACATTAGACGCCATCGCAGAGATTTCCCCTATGCGTGTGAGCGTTGTGATAAAAGATTTGCCACTTCCACGGAAGTTGCCATACACATGCGTACCCATACAGGAGAACGACCCTATATATGTGATCTGTGTGGCAAATCCTTCAAGACCTGGTCATTCTTTGACATTCATCGAAGAAGACATCTAAATCAATCCACCTTCCATTGTCCCATCTGTCCCAAGGGTTTCTATGAGAAGAATCGTTTCACCGATCACATGAACACGCATTGGGCCATACGGAAACATTTGTGCACGGTGTGCGGCAAGACCTTTACCACCTATGGCAATCTGAAGAAGCACACCGAACTGCACTTGGCGGTGAAAAAGTACAAGTGTTCCGCTTGTGGCAAACGATTTGCACAGTTTGCTAGCCTGCGCTGGCACAAGAAACGTGAGCATAGCAGCGAAGCGGAAACGGAGACAGAGAAGAGTACTTAA
Protein Sequence: MLPLQQQSEQVHPHTHQPFNWQLEDYAYFRKCGEITTSPDRQCFGFNCAFCPAICLQFSVFMDHIRGQHLHDVRRRYEGAEEKIEQTTQTDLMIMEMDCPDMYHLDPPEPHQATTNKSKICRQMEDTDTQRLGVDLQLVNIATTSPMQQQQQQQLEGLDNAVTPEIDLVYVMENPLPPSPPLSADISADEQSQSCVLPLLDPFEVLQAGITTTPLTGQPHKGLTSAPPPRYETRRVAMQRKLQKEEQHQQLEENVMQLTPPATPPTEVSPTSPSSSSSVTSVDFKLRSRRELERNREFVSSLLQSYERMEKLWNPKHPDYKYNTKRSVYGELAAPLENSFQMQLTGAEIFAVLKELRGRYRRELSKLNSLGGKYKSRLWYFDKMHFLRGVIEHKRAEREAKISNDSTESEKSCETDAESSSKSAQYREVLSYILDAFKRQECLWNPQHYDYATCTKKDLYRDISIQLQEDLNYEMNGDECYKEIQKLRTRYRKELRMVIKHKGLYLPKLWCYDYLEFLHPILQQQIFNKISKKVGIVETQQKTKFINAPVIEFASTDDQLQFVEIYRNYSALWDVDHPDFRSNAYRSQALNQMLDELNTTFHSEYTAEQLEKTLFELRKNFSAQKRKILANSSASSSIPLLHAKLAQFLEQNLGPFSCDVCSQLIKTSDQYKVHRSAHDGTQPFICTLCGKGFQMPCNLTVHIRRHRRDFPYACERCDKRFATSTEVAIHMRTHTGERPYICDLCGKSFKTWSFFDIHRRRHLNQSTFHCPICPKGFYEKNRFTDHMNTHWAIRKHLCTVCGKTFTTYGNLKKHTELHLAVKKYKCSACGKRFAQFASLRWHKKREHSSEAETETEKST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00915651;
90% Identity: iTF_00919354;
80% Identity: -