Lmag017148.1
Basic Information
- Insect
- Lordiphosa magnipectinata
- Gene Symbol
- -
- Assembly
- GCA_018904285.1
- Location
- JBAMBO010002834.1:87981-98549[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00056 0.042 15.0 5.6 1 23 174 196 174 196 0.97 2 15 0.0037 0.28 12.4 3.3 1 23 232 255 232 255 0.96 3 15 0.00037 0.027 15.6 2.7 1 23 305 328 305 328 0.96 4 15 0.0036 0.27 12.5 0.4 2 23 384 405 383 405 0.97 5 15 6.3 4.7e+02 2.2 0.7 1 19 520 538 520 540 0.76 6 15 0.024 1.8 9.9 0.7 1 23 550 572 550 572 0.94 7 15 0.00027 0.021 16.0 0.7 1 23 579 602 579 602 0.96 8 15 0.00064 0.048 14.8 0.9 2 23 611 632 610 632 0.96 9 15 0.0054 0.4 11.9 0.7 2 21 659 678 658 682 0.90 10 15 0.0013 0.097 13.8 1.6 1 23 721 744 721 744 0.96 11 15 0.036 2.7 9.3 1.5 1 23 781 804 781 804 0.95 12 15 8.4e-05 0.0063 17.6 0.5 1 23 838 861 838 861 0.96 13 15 0.14 11 7.4 0.2 1 23 871 893 871 893 0.94 14 15 9.6e-05 0.0072 17.4 3.7 1 23 899 921 899 921 0.99 15 15 9.9e-06 0.00074 20.5 3.2 1 23 927 949 927 949 0.98
Sequence Information
- Coding Sequence
- ATGACCAGAACCTGTAGAATCTGTGCTAGCAGTGAGGGGCGGTTTTGGATTGAAACGCCTGTGGAGAAGTATGCTGATAAGACCTTCAATCAGCTGCTAATGGAGCTGACACGGTTGGAGGTGGCCATGTCGCAGTCAGATCAGCTACCGCCTTGGATATGTCGAAGTTGTGCACAGAAATTGCAGAATTCCTATGACTTTGTTTTGCAAGCCAAGCAGACGCACGAAATGTGGCTGCAAAAGACGGAATCTTGCGAGGATTACGGCGAGAAAGACGAGGAGTACGGGGAAGAGGCTGATACGGACACCTGCCTGCGTGAAACTCCCATTCAACTGTTGGAAATTGAGGGAGTTACCATCAAAATGGAGGAACCGGAACCAGCCGCTGTGGCGGCGGCGCCTGCACCTGATCCTCTGGTGCGCGCACGCCTATCCCATTTTACTGATACAGAAGATGAGGATGATGTGCCACTGAAGCAGCGTTGCTCCGCAAAGCCAGGACTTATCCAACCAAAGCCACATAAATGTAATCTCTGTAACAAATCATTTCGATATATCACCAATCTGTATAGGCACAAAAAAGAACACAACTCCACCGAGAAGGCAGAACCTTTTCTGCATCGTGTTATTAAAAGTGCGGTGGCTGCCAGAAGCAACTCCAAGGCGGATGCCGAGGATGAGGAGGATAACTACTATAAATGCGATCAGTGTGACAAATCCTACAAGTATATCATGCTGCTGGTCAAGCACAAGCATAAGGTTCATGGTGGCAGCCAAATGCCTGGTTCAGCCCGGCTCACACGTCCTGCTCCTGCCCAGCGACCCAAGCTTAGCACGGATACACTAGTGCACAGCCTCATCCAGGCTGTGGAGATCTCTGATGAGGATGGCAACTCCAGTTCGGATAATTATTACAAGTGCGACGAATGCGATAAATCCTACAAATACATAGTCAGTCTCATCAAGCACAAACATAAGGAACATACCGATTTGGACAAAGATGCCATGTCAACTGTACCTGGTCTCGACCAGCCTCTGCCCTCGACTTCCGCTTCGGCTGGCATTGCCCCGCCAAAGCCCTCGCGCATCAATCGTCGTGTTGAGGGTTTCGATTTGTATCGTTGCCAGCCCAATGGCTCCAAGGAGATTCAGTGCATGATTTGTCTGCGTCGCTTTGCCAAATTGGGCGAATTACGCACCCATCTCAAATACCATCCCAaagattttgattttcatgctCATGGCGAACCCATTGAGCGAATAGCCGAAGGCTTCTTCAAGACGGCCGTAGAGTCCACCGTGGATGGTCTAAAGCGGCGCATTCTCAATGATCTCAGTGAGGGCGTTTATGGACGCTACTATTCCATTACCAATCAGTCACGCTACGAGATGAGTCTGGATAGCTCGGATACGGATAGCGATGGTGATGAAGCCGCCGAAGTGGTGCTGCGCCGTAGCTATGCCTGTGAGCTGTGCGACAAGCCGGAGGCAAAATGGCCACGAAAGTATCAGCTCCATGAGCATCATCGACAATGTCATACCTGGATGGAGGCACCGTATGTGTGTCGCCGTTGCGATTCTCGATTTCTGAGTGAACAATTGCTGGAGCATCACACTAGTCAATTATGTCAAAACACACTAAAGCGATTCATGTGTGATAAGTGTCCGCAGCGATTCTTTTGGCGCAAGAATCTGCGGGCCCATCTGGTGGAGCACAAGGATAAGCAAGAGAACTATCCCTGCGACCAATGCCAACGTAGTTTTCAGGACAAAAGCGCCGTGACCAAACACAAATTGATGATGCATTCAGATGGCAATGGTCAACTTTTACCCTGTCGCTGGTGCACTCGTGTGTTTTATCGTCCCGCCTTGCTGCACAAGCATGTCCAACGACATGGCTTCAGCGGTCCAGATATACCATTGGCCGAAACTTTGCTTGCGGATGCCGCCAAACCCTTGGGACCCAAGACCATTCACTGCAAGCTCTGTGATATTCAGTTCATCAGTATTGCGGACTTGCGCCGACACATGATCCACATGGGGCATGAGCATCGGGCAGCCAACTACATGATCAGCACCGAGGCAGGCTTTGAACTGCAACTGGAGGACACGGATGACAGTGACGATGGTGGGGAAGATGCTGGTCATATTAGAAGGTCCTACACCTGTGATCTCTGTCAGATGAGCTTCCGCCGCCGTCGAGACATGAGTGAGCATCAATATTCTTTGCATACTTTTGATAAATTGCCACATAAATGCGAGCATTGCATTTACAAGAGCGTGGACGGGCTTATGCTGGAGCACCATTTGCGAACTCAATGCTGCAACCAGGACAAGAAATTTATTTGTTCACACTGTGGGTATAAATTCATGTGGCAGCAGAATCTCGATCAGCATTTGGTCACTCAGCATCCCCAACCAAACAGCAGCCAGGAGCAACTACAGCAGCAATTggtccagcaacaacaacaacaacaccaaataCCAATACGTCGACGAAGACGCTTCCGTTACCAATGTCCGCACTGCTGGCGCTCGTTTGTTATCCAACCCAGTTTAGATAAACATATACGGGATATGCATGTGGCCAAAAAGAATCCGGGCAAGAAATATCTGTGCTCGCTGTGCGGCCTAGAATCGCTTACGCCCAACAAACTGAGCATACATATGCGTCGTCACAATGGCGAAAAACCCTTCAAATGCGATCTATGCGACATGCGTTTTACTGTCCATTACGAACTGAAGGTCCATCGGAGAAAACATACCGGCGAGCGTCCATATCAATGCACCTTCTGTGACAAGCATTTCGCACGACCCGATAAATTGAGACGGCATGTTTATATGCACAGTGTCAAGCATTAG
- Protein Sequence
- MTRTCRICASSEGRFWIETPVEKYADKTFNQLLMELTRLEVAMSQSDQLPPWICRSCAQKLQNSYDFVLQAKQTHEMWLQKTESCEDYGEKDEEYGEEADTDTCLRETPIQLLEIEGVTIKMEEPEPAAVAAAPAPDPLVRARLSHFTDTEDEDDVPLKQRCSAKPGLIQPKPHKCNLCNKSFRYITNLYRHKKEHNSTEKAEPFLHRVIKSAVAARSNSKADAEDEEDNYYKCDQCDKSYKYIMLLVKHKHKVHGGSQMPGSARLTRPAPAQRPKLSTDTLVHSLIQAVEISDEDGNSSSDNYYKCDECDKSYKYIVSLIKHKHKEHTDLDKDAMSTVPGLDQPLPSTSASAGIAPPKPSRINRRVEGFDLYRCQPNGSKEIQCMICLRRFAKLGELRTHLKYHPKDFDFHAHGEPIERIAEGFFKTAVESTVDGLKRRILNDLSEGVYGRYYSITNQSRYEMSLDSSDTDSDGDEAAEVVLRRSYACELCDKPEAKWPRKYQLHEHHRQCHTWMEAPYVCRRCDSRFLSEQLLEHHTSQLCQNTLKRFMCDKCPQRFFWRKNLRAHLVEHKDKQENYPCDQCQRSFQDKSAVTKHKLMMHSDGNGQLLPCRWCTRVFYRPALLHKHVQRHGFSGPDIPLAETLLADAAKPLGPKTIHCKLCDIQFISIADLRRHMIHMGHEHRAANYMISTEAGFELQLEDTDDSDDGGEDAGHIRRSYTCDLCQMSFRRRRDMSEHQYSLHTFDKLPHKCEHCIYKSVDGLMLEHHLRTQCCNQDKKFICSHCGYKFMWQQNLDQHLVTQHPQPNSSQEQLQQQLVQQQQQQHQIPIRRRRRFRYQCPHCWRSFVIQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMRFTVHYELKVHRRKHTGERPYQCTFCDKHFARPDKLRRHVYMHSVKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00914715;
- 90% Identity
- iTF_00915612;
- 80% Identity
- -