Lmag022151.1
Basic Information
- Insect
- Lordiphosa magnipectinata
- Gene Symbol
- Hr39
- Assembly
- GCA_018904285.1
- Location
- JBAMBO010004050.1:81654-88838[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.43 4.2e+03 -2.5 3.7 121 165 3 49 1 64 0.72 2 4 0.26 2.5e+03 -1.8 1.4 77 112 238 276 170 354 0.59 3 4 1.9e-20 1.9e-16 61.2 4.2 1 158 431 588 431 596 0.79 4 4 5.7e-83 5.5e-79 267.2 1.3 182 408 582 799 578 799 0.96
Sequence Information
- Coding Sequence
- ATGTCTAGCATTAAGACAGAGCAACTGAGTGCCCCAACATCCAGTTCCAGTGGTAGCTATCAGCTACCCATGAATATGTCCACTGCAGCcactgcagcagcagcgtcgacggccacaacaacaacaacaacaatacgtCACAATGTCTCCGTTACGAACATCAAATGTGAGCTAGACGACCTACCCACACCCAATGGCAATGTGGTGCCAGTTATAGCCAACTATAATCATGGCAGTCTACGAATACCCCTAAGTGGAAAGTCAAACAATGAAGCCGATTCGGATTCAGAGACAGAACTTACAAATATAGAGAACCTGAAGGTACGACGACGTGGTACAGATAAAAATGGTCCGCGACCCATGTCCTGGGAGGGTGAACTGAGTGAAACGGAAACCAATACCCTGGAGGAAGAGGAGCTTATGGAAACGGATGGCATGGGCACGATGGTGATCAAGAGCGAGGCTGGTACTGGTGTACCAACTATATGTCCCATCAAAACGGAGCTGGAAAATATAGCAGAAGAGCTTAAGCCACAGAGCTGTAAGCCCACGGGCTATCCGCTCTCCAAACTGAAATTGGCACCCACGCAAAGTGATCCCATAAATCTCAAGTACGAACCAAGTTTGGGTGATAATTCTCCTTTGATACACTCGCGTACCAAGTCGAATAGTGGAGGACATTTACCGCTGCCCGCCAATCCCAGTCCCGATTCGGCCATACATTCCGTTTATACGCATAGTTCACCCTCCCAATCGCCATTGACCTCCCGACATGCCCCATATACGCCCTCGTTGAGTCGAAACAATAGCGATGCTTCGCACAGCAGCTGTTATAGCTACAGCTCTGAGTTTAGTCCCACACATTCACCCATTCAGGGGCGTCACAATCCCATTTATGcaggtggaggaggaggaggacctACTCAGTATGTTCAGCATAGTGTTTTGTACCGGCCACTGAACGTAGAGGCAGCCGAGGCTCAAAATCTTTCTATGGACTCGACTAGCCTGGATCACTCCGGTTCCTCCAATTTACCCGCCTCACCAGCTGGCATCTCCCGACAGCAATTGATTAACTCTCCCTGCCCCATTTGCGGCGATAAGATCAGTGGCTTTCACTACGGCATCTTTTCGTGCGAATCGTGCAAGGGCTTCTTCAAACGTACAGTCCAGAATCGCAAGAATTATGTATGTGTCCGTGGTGGGCCCTGTCAAGTGAGCATTTCCACACGTAAAAAGTGTCCCGCCTGCCGTTTTGAGAAATGCCTGCAAAAGGGCATGAAGCTGGAGGCCATACGCGAAGATCGCACTCGGGGCGGTCGGTCGACATATCAATGCTCGTACACGCTACCGAATTCCATGCTAAGTCCGTTGCTCAGTCCGGATCAGGCGGCTGTAGCTGCAGCAGTGGCTAAtcaacagcagcatcagcaccaACATCACCGTCTGCAGCAGCAAATGAATGGTTTTGGCAGTGGATCCACATCCCTGCCGGCTAGCCCCAGTTTGGGGATTAGTGGTGGCGGAGCCAACATTAAAACAGAGTACACGGAGGCAACAGCGAATCATGCAACGCGAACTGCTAGCATTCCAGCACTATTGCAGGAAATCATGGATGTAGAACATCTATGGCAATACACAGATGCCGAATTGGCACGCATTAATCAGCCATTGTCCAGTTCGTCATCCACATCAGCCTCATCAACGACTGCTGGTCAAGGTCAATCATCTAACACTGCCAATAATGCCCAACAAATGACCAACCCACTGCTGGCCAGTGCTGGTCTCTCATCCAATGGCGAGAATGCCAATCCCGATCTAATTGCTCATCTTTGTAATGTGGCCGATCATCGTCTCTATAAGATTGTCAAGTGGTGCAAAAGTCTGCCGCTTTTCAAGAATATTTCGATTGACGATCAAATATGCTTGCTCATCAACTCGTGGTGTGAGCTATTGCTTTTCTCCTGCTGTTTTCGTTCCATTGATACACCCGGTGAGATTAAGATGTCACAAGGTAGAAAGATTACGCTGGCGCAAGCCAAAACAAATGGATTACAGGCCTGCATTGAACGCATGCTCAATCTGACAGATCATTTGAGACGTTTACGCGTGGATCGCTATGAATATGTTGCCATGAAGGTAATCGTGCTGCTGCAGTCGGATACCTCCGAGCTGCATGAGGCGGTCAAAGTGCGCGAATGCCAGGAGAAGGCGTTGCAAAGCTTACAGGCTTATACTCTGGCCCATTATCCCGATACGCCGTCCAAATTTGGTGAGCTGCTGTTGCGTATACCCGATCTGCAGAGAACGTGTCAGCTGGGCAAGGAAATGCTGACGATTAAGACACGAGATGGTGCCGATTTTAATTTGTTGATGGAACTCTTACGCGGAGAACAttga
- Protein Sequence
- MSSIKTEQLSAPTSSSSGSYQLPMNMSTAATAAAASTATTTTTTIRHNVSVTNIKCELDDLPTPNGNVVPVIANYNHGSLRIPLSGKSNNEADSDSETELTNIENLKVRRRGTDKNGPRPMSWEGELSETETNTLEEEELMETDGMGTMVIKSEAGTGVPTICPIKTELENIAEELKPQSCKPTGYPLSKLKLAPTQSDPINLKYEPSLGDNSPLIHSRTKSNSGGHLPLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQGRHNPIYAGGGGGGPTQYVQHSVLYRPLNVEAAEAQNLSMDSTSLDHSGSSNLPASPAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCQVSISTRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNSMLSPLLSPDQAAVAAAVANQQQHQHQHHRLQQQMNGFGSGSTSLPASPSLGISGGGANIKTEYTEATANHATRTASIPALLQEIMDVEHLWQYTDAELARINQPLSSSSSTSASSTTAGQGQSSNTANNAQQMTNPLLASAGLSSNGENANPDLIAHLCNVADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSIDTPGEIKMSQGRKITLAQAKTNGLQACIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTSELHEAVKVRECQEKALQSLQAYTLAHYPDTPSKFGELLLRIPDLQRTCQLGKEMLTIKTRDGADFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00914558;
- 90% Identity
- iTF_00919862;
- 80% Identity
- iTF_00918195;