Basic Information

Insect: Lordiphosa fenestrarum
Gene Symbol: -
Assembly: GCA_035044985.1
Location: JAWNNO010003039.1:749827-752172[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.63 40 5.3 2.0 3 23 273 295 271 295 0.92

2 10 1.9 1.2e+02 3.8 1.0 3 21 433 451 431 455 0.92

3 10 0.028 1.8 9.5 0.2 2 23 477 499 476 499 0.90

4 10 0.52 33 5.5 0.9 1 23 516 539 516 539 0.95

5 10 0.92 59 4.8 0.2 1 21 544 564 544 568 0.89

6 10 0.032 2.1 9.3 0.1 1 21 621 641 621 642 0.94

7 10 2.3 1.4e+02 3.5 0.2 3 23 662 682 660 682 0.91

8 10 0.00023 0.015 16.1 4.2 2 23 695 715 694 715 0.97

9 10 2.8e-05 0.0018 19.0 2.1 1 23 721 744 721 744 0.97

10 10 0.72 46 5.1 0.2 1 11 769 779 769 781 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.63	40	5.3	2.0	3	23	273	295	271	295	0.92
2	10	1.9	1.2e+02	3.8	1.0	3	21	433	451	431	455	0.92
3	10	0.028	1.8	9.5	0.2	2	23	477	499	476	499	0.90
4	10	0.52	33	5.5	0.9	1	23	516	539	516	539	0.95
5	10	0.92	59	4.8	0.2	1	21	544	564	544	568	0.89
6	10	0.032	2.1	9.3	0.1	1	21	621	641	621	642	0.94
7	10	2.3	1.4e+02	3.5	0.2	3	23	662	682	660	682	0.91
8	10	0.00023	0.015	16.1	4.2	2	23	695	715	694	715	0.97
9	10	2.8e-05	0.0018	19.0	2.1	1	23	721	744	721	744	0.97
10	10	0.72	46	5.1	0.2	1	11	769	779	769	781	0.85

Sequence Information

Coding Sequence: ATGAATTCCGATTTGGATGACTCGCATCTTTGCATCAAGTGCAATGCCACCATCCTGGGCCTTGAGAAGTATATTGAACACCGCAAACAGAATTGTATCATATCCGGAAAATCAACAGACAGTACCACCAGCACGGTCACCACTTCCACCACCCAAGTATCCCCTACCTTGATCAGTCGTCCTTCTATGGATCACTCCTATGACAGCTTTCACTTTACCGAACCTGAGGCTCCTAGTAGCTATCTGCGTAAAACCGCCGCCAGTCACGGCGGCAAAACTTCCAAATCTCTAACTGAAGCCTACGATCTCACATATGAACTAGGAGCAGATGTGTTTTTCTCATCCCTACAATTGCAGAGTGTTTCCACAGGCGGTAAGACAGTGCGAGAGAGACCCAAAGAAGAGGGATGGCCTGCATCCCGTGGAGATCCTGTGCTAAAAGCTGTCAGACATCAAGACGAGGCTGTTTATAAACCTCTTAATTTTGTGAACGATTCGCCCGAGGCAAGTGAGGAAgaggacgaggacgaggaACCAGATGACTTTGATAACGAAGAAGATGAATTGGAAGAGGATTATGTGCCCACTGTGCCAGCTACTCACACCGGTGGGAAATGGAAGCCTGAACACCGTCCGCAACTAAGGCACACACACCTGGAACGCCTGTCTCCCAGCTGGGATGAGCCGGTCGAGGAAAACTATGCACACCCACCGGCCGATCATACAAAAGGAAAGTGGGTGCCCGGTAGCAAGCAGTTGGAATATCGCGAGAATATAGATCTGACCAAGCTGGAGGAGTTAAGAGCCAGCTATTGGTGTAACATCTGTTGTAGGCGCTTAAAAAATCGAGTAAACTACGAGCAACATCTACGCAGTGCCTACCATTTGAAGAGAGCCGAGACTGAGTGTCAGCTGGAACAGGCAACGCTAGGTGATCAGCTTACCTTAAGCAAAGACTTCAGTCCACCACAACCCACTCCGGGCAAAGTTACTCAGGGAAGACAGCGTCGTGCCAATCTGTTGCGCTGTGAGCTCTGTCGACATAGTCTAGCACGTCATTTGATGGGTAAACacttgatctcccactttcaCTACCGCAAACTTCAGCAACAGAACCAAACACGTCGTCAGAACTCACTGCAGTACATTCTCAACCACATGACCAGCATAGTGAAGCAGTCCCCTTTCCAGTGCCTGCCATGCAGATTTTATGCCAACACTGAGGAGACCTTTCTGCAGCACTGGCAATCCCTGGAACACCAAAAGCTTACAGATCAGCTGGGTGGTACCTTCTGGTGTGAATATTGTCAGTTTGAGTGTGACTCAAATGAGTCCATGTGGCAGCATTTGCTGGACTCTAACCACAAAGAGGTGCTGCTGGCTCTCAATCGTTCGGTACCCATTTGCATAGCCCAGAGAACATATATTTCGTGTGGAGAATGTGGCATGCGCTTTCTTTATAATGCTCAACTACGTAGACACTTCGAGTTGGACCATCCGGGCATAGAAGCCACCGGCACCGCTGCCGAGGACTATCAGTGTCAGTTTCGTTGTGGGCTTTGTGATGCACCTCAACGTTCAAGGGTGGCCTTGCAGCGTCATGAGAAGCATAAACATCGTCTTTCGAGATACTTTTGTGCCATTTGCCGCTTGGAATTTGACAACCCACTGGAAGCTCGTCGGCATCGTAGTCTTATGCAGCATAAACTGAAGTCAAAGCCGAGGATTACCACTACTCAGCCAGAGCAGGAAATAGAGCATCTATTACGTGAGGTACTTGAGGAGCCAGTGCCAACTGCTCCCGTTCCCCACAAGAAAAGTCGCTCTTCATCGTCCAATCCTCAACCCtctgatcaacaatatatttGTCTCAGTTGTGGTGTAAGTTTCCAAACCGCTCAGGCTTTGGGTCGTCATACACGTAGCTGTCAGCCCATAGCCTCTACTTCCCAGCAATGCTCCCCTCTTTCAAAATCCTGGGCCTGCGATCAATGCGACTTTAGTGCCCAATACGAATCGGATCTGATCTATCATCGTTTCTTTCACAATCGATCTACAGCGATAGGCAAAAATGAGCTGCTGCAGTGTCCTTTGTGTCCCAAACACTTTCGCAAGCATTCCCTTCGTGCTCATTTGCGTAATCATACAAACGAGAGAATCTTTGAGTGTACTGAGTGTCTGCTGAAATTTGCCAGACGTCACAATTTAAAGAATCACATGGCCACCATGCATGGCGCAAAACAAGAGCAGCCAGAGAAGGCAAAACCAGAAGTCAATAAGGGAAAACAGAAGCcaaagaaaacatttcaatGTGGAATCTGCGGAAAAATATTGTCCAAAAAGTGA
Protein Sequence: MNSDLDDSHLCIKCNATILGLEKYIEHRKQNCIISGKSTDSTTSTVTTSTTQVSPTLISRPSMDHSYDSFHFTEPEAPSSYLRKTAASHGGKTSKSLTEAYDLTYELGADVFFSSLQLQSVSTGGKTVRERPKEEGWPASRGDPVLKAVRHQDEAVYKPLNFVNDSPEASEEEDEDEEPDDFDNEEDELEEDYVPTVPATHTGGKWKPEHRPQLRHTHLERLSPSWDEPVEENYAHPPADHTKGKWVPGSKQLEYRENIDLTKLEELRASYWCNICCRRLKNRVNYEQHLRSAYHLKRAETECQLEQATLGDQLTLSKDFSPPQPTPGKVTQGRQRRANLLRCELCRHSLARHLMGKHLISHFHYRKLQQQNQTRRQNSLQYILNHMTSIVKQSPFQCLPCRFYANTEETFLQHWQSLEHQKLTDQLGGTFWCEYCQFECDSNESMWQHLLDSNHKEVLLALNRSVPICIAQRTYISCGECGMRFLYNAQLRRHFELDHPGIEATGTAAEDYQCQFRCGLCDAPQRSRVALQRHEKHKHRLSRYFCAICRLEFDNPLEARRHRSLMQHKLKSKPRITTTQPEQEIEHLLREVLEEPVPTAPVPHKKSRSSSSNPQPSDQQYICLSCGVSFQTAQALGRHTRSCQPIASTSQQCSPLSKSWACDQCDFSAQYESDLIYHRFFHNRSTAIGKNELLQCPLCPKHFRKHSLRAHLRNHTNERIFECTECLLKFARRHNLKNHMATMHGAKQEQPEKAKPEVNKGKQKPKKTFQCGICGKILSKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00914898;
90% Identity: iTF_00914898;
80% Identity: -