Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.3e-05 0.037 14.4 1.3 11 40 7 33 3 35 0.88

2 9 9.3e-06 0.015 15.6 1.0 13 40 40 64 33 66 0.87

3 9 3.8e-05 0.063 13.7 4.5 3 40 59 95 58 97 0.89

4 9 2e-06 0.0032 17.8 2.0 11 40 99 125 95 131 0.89

5 9 9.3e-06 0.015 15.6 3.3 2 40 119 156 118 158 0.90

6 9 7e-06 0.012 16.0 0.7 13 40 163 187 156 194 0.87

7 9 1.5e-05 0.025 14.9 3.8 3 40 182 218 181 220 0.90

8 9 8e-06 0.013 15.8 0.8 13 40 225 249 218 251 0.87

9 9 0.00073 1.2 9.6 2.6 3 28 244 271 243 282 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.3e-05	0.037	14.4	1.3	11	40	7	33	3	35	0.88
2	9	9.3e-06	0.015	15.6	1.0	13	40	40	64	33	66	0.87
3	9	3.8e-05	0.063	13.7	4.5	3	40	59	95	58	97	0.89
4	9	2e-06	0.0032	17.8	2.0	11	40	99	125	95	131	0.89
5	9	9.3e-06	0.015	15.6	3.3	2	40	119	156	118	158	0.90
6	9	7e-06	0.012	16.0	0.7	13	40	163	187	156	194	0.87
7	9	1.5e-05	0.025	14.9	3.8	3	40	182	218	181	220	0.90
8	9	8e-06	0.013	15.8	0.8	13	40	225	249	218	251	0.87
9	9	0.00073	1.2	9.6	2.6	3	28	244	271	243	282	0.85

Coding Sequence: atgaaattgcatgatgagACTAGGGAGAAGCAGAAATACCAGTGTCAACATTGTGAGAATACCTTTGCGTATGCATGGAATCTCAAACGGcacatgaaattgcatgatgagACTAGTGAGAAGCAGAAAAACCAGTGTCCAcattgtgagaaaacctttgcgTATGCATGGAATCTCAAACGGCACATGCAATTGCATGATGAGACTAGGGAGAAGCAGAAATACCAGTGTCAACATTGTGAGAATACCTTTGCGTATGCAAGGACTCTCAAACGGcacatgaaattgcatgatgagACTAGGGAGAAGAAAAACCAGTGTCAAcattgtgagaaaacctttgcgTATGCATGGAATCTCAAACGGCACATGCAATTGCATGATGAGACTAGGGAGAAGCAGAAATACCAGTGTCAACATTGTGAGAATACCTTTGCGTATGCATGGAATCTCAAACGGcacatgaaattgcatgatgagACTAGTGAGAAGCAGAAAAACCAGTGTCCAcattgtgagaaaacctttgcgTATGCATGGAATCTCAAACGGCACATGCAATTGCATGATGAGACTAGGGAGAAGCAGAAATACCAGTGTCAACATTGTGAGAATACCTTTGCGTATGCATGGAATCTCAAACGGcacatgaaattgcatgatgagACTAGTGAGAAGCAGAAAAACCAGTGTCCAcattgtgagaaaacctttgcgTATGCATGGAATCTCAAACGGCACATGCAATTGCATGATGAGACTAGGGAGAAGCAGAAATACCAGTGTCAACATTGTGAGAATACCTTTGCGTTCACATCACAAAATCAGATAGCTGATCATATGCTAAGCCATAACGATAGCGGCGATGTTGACAATGCAGCTCTCGCCATTTCCTCCTCAGACGATCTCGCCATTTTAACGAGATATAATCTGAAAACTTATCAggacaccagcagcagcagcagtgatAGTGATGACAATGACGCGGAGGTAGTGGATAAGGCGGGGATTGTCCAACAAAGCTTGCGTAATGGTGCAATGCAGAAGGATATTTAG
Protein Sequence: MKLHDETREKQKYQCQHCENTFAYAWNLKRHMKLHDETSEKQKNQCPHCEKTFAYAWNLKRHMQLHDETREKQKYQCQHCENTFAYARTLKRHMKLHDETREKKNQCQHCEKTFAYAWNLKRHMQLHDETREKQKYQCQHCENTFAYAWNLKRHMKLHDETSEKQKNQCPHCEKTFAYAWNLKRHMQLHDETREKQKYQCQHCENTFAYAWNLKRHMKLHDETSEKQKNQCPHCEKTFAYAWNLKRHMQLHDETREKQKYQCQHCENTFAFTSQNQIADHMLSHNDSGDVDNAALAISSSDDLAILTRYNLKTYQDTSSSSSDSDDNDAEVVDKAGIVQQSLRNGAMQKDI

Sequence clustering based on sequence similarity using MMseqs2