Lcol010377.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- -
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000883.1:121610-125394[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.026 1.4e+02 2.9 0.0 25 45 52 72 44 75 0.88 2 9 0.054 2.8e+02 1.9 0.7 20 49 116 149 108 153 0.67 3 9 5.2e-05 0.27 11.6 0.0 21 45 173 197 162 199 0.91 4 9 0.085 4.5e+02 1.3 0.0 21 45 201 225 197 232 0.88 5 9 0.52 2.7e+03 -1.2 0.0 23 45 259 281 243 285 0.73 6 9 0.00056 3 8.3 0.1 21 45 285 309 275 313 0.90 7 9 0.083 4.4e+02 1.3 0.0 21 45 313 337 309 345 0.88 8 9 0.56 2.9e+03 -1.3 0.0 21 52 341 372 328 373 0.74 9 9 0.019 1e+02 3.4 0.0 25 45 432 452 424 455 0.88
Sequence Information
- Coding Sequence
- ATGCCCGAGCAATGCCGTGTTTGCAGTTCCAGCTTGGCAGATGGCACCACCACCAACTGGCCTAATATATTCACCGACTCGGAAGACAACTTGTTGCTTATAGTCGAGGAGGTGACTGGACAGGAGGTCAAACAGGTTGAGAATCTACCGGAAAGCATATGCCCTTCATGCTTGGCAGCGGCAAAAACAGCATTGAATTTTAAGCGGCGATTTGAGAACAGTCTTCAGCTACTGGAGCAGAATAGAACAAGAAAAGAGGACAGCATAAGCGGAGAAGATGATCTGGAATTTCTCACAGAAGGCAGCGAAGAAGGCGAAAGTAAAGAAGAGCAACTTGGCACTCAGAACGCAGAGCGACCCTTCGAATGCTCTCATTGCTCGAAAACTTTTTCAATAAGGTCGAATCTAAACCAACATCTACGGACTCACACTGGCGAGCGACATTTTAAATGTACCCAGTGTCCGAAATCATACACCACACTTGGCAATCTAAAAGTTCACCTTCGCATTCATACTGGCGAGCGACCCTTTAAATGCACCTTCTGCTCGGAAACCTTTGCCCAAAGCGGCAATCTAAAGAGACACCTACGCACTCATACTGGCGAAGCACCCTTCGAGTGTTTACATTGCTCGGAAACATTTAGAGAAAAGGGTAATCTTAAAACACATATGCGCACTCACACTGGAGAACGACCCTTCAAATGTTCCCAGTGCTCGAAGACCTTTGCCCATAGAGGCACTCTAATGAATCACCTTCGCACTCATACTGGCGACAAACCGTTCAAATGTACCCAGTGTCCGAAATCATTTACCGTACAGATCAATCTCAAACAGCACCTTCGCACTCATACTGGCGAGCGACCCTTCAAATGCACCCATTGCTCGGAAACCTTTGCCCAAGGCAGCAATCTAAAGAGACACCTACGCACTCATACTGGCGAAGCACCCTTCGAGTGTTTACATTGCTCGGAAACATTTAGAGAAAAGGGTAATCTTAAAACACATATGCGCACTCACACTGGAGAACGACCCTTCAAATGTTCCCAGTGCTCGAAGACCTTTACCCATAAAGGCACTCTAATGAATCACCTTCGCACTCATACTGTCGACAAACCAGCAAAGGGACAACAAATACCCGAGCAATGCCGTGTTTGCAGTTCCAGCTTGGCAGATGGCACCACCACCAACTGGCCTAATATATTCACCGACACGGTTGCTGGACAAGATAACTTGTTGTTGATAATCGAGGAGGTGACTGGACAGGAGGTCAAACAGGATGAGAATTTACCCCAAAGCATATGCCCTACATGTTTGACAGCTGCAAAAACTGCATTTAATTTTAAGCGGCGTTTGGAGAAGAGTCTTCAGCTGCAGGAGCAAACAAGAACAAGGAACGAGGATTCATTGCAAGTCACTTTAGAGGAGACCCTCAACAGCAAAGACGAAGAGAGCGAAGAAGATGATTTGGAATTTCTCACAGAAGAAGACAGCGAAGAGGGCGAAAGGAAAGAGAAGCAAGGACCCCTTAAATGCTCCCACGGCACCTACGCTGTCACACTGGCGAGCAACCTTATAAATGTAGCCAATGCCCTAAATCCTTTACCCAAATAG
- Protein Sequence
- MPEQCRVCSSSLADGTTTNWPNIFTDSEDNLLLIVEEVTGQEVKQVENLPESICPSCLAAAKTALNFKRRFENSLQLLEQNRTRKEDSISGEDDLEFLTEGSEEGESKEEQLGTQNAERPFECSHCSKTFSIRSNLNQHLRTHTGERHFKCTQCPKSYTTLGNLKVHLRIHTGERPFKCTFCSETFAQSGNLKRHLRTHTGEAPFECLHCSETFREKGNLKTHMRTHTGERPFKCSQCSKTFAHRGTLMNHLRTHTGDKPFKCTQCPKSFTVQINLKQHLRTHTGERPFKCTHCSETFAQGSNLKRHLRTHTGEAPFECLHCSETFREKGNLKTHMRTHTGERPFKCSQCSKTFTHKGTLMNHLRTHTVDKPAKGQQIPEQCRVCSSSLADGTTTNWPNIFTDTVAGQDNLLLIIEEVTGQEVKQDENLPQSICPTCLTAAKTAFNFKRRLEKSLQLQEQTRTRNEDSLQVTLEETLNSKDEESEEDDLEFLTEEDSEEGERKEKQGPLKCSHGTYAVTLASNLINVANALNPLPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00916436;
- 90% Identity
- iTF_00916436;
- 80% Identity
- iTF_00916436;