Basic Information

Insect: Lordiphosa collinella
Gene Symbol: -
Assembly: GCA_018904265.1
Location: JAEIFV010000426.1:65914-72174[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.015 0.73 10.6 0.3 1 23 1206 1229 1206 1229 0.95

2 12 0.00027 0.013 16.1 2.7 2 23 1405 1426 1405 1426 0.97

3 12 0.00017 0.0085 16.7 0.9 3 23 1434 1454 1432 1454 0.98

4 12 8.6e-07 4.2e-05 24.0 4.1 2 23 1461 1482 1460 1482 0.97

5 12 8.1 4e+02 2.0 0.4 5 23 1495 1513 1493 1513 0.96

6 12 2 99 3.9 5.4 3 23 1520 1541 1518 1541 0.93

7 12 0.22 11 7.0 0.2 2 23 1552 1572 1551 1572 0.96

8 12 8.2e-05 0.004 17.7 0.4 1 19 1578 1596 1578 1600 0.95

9 12 5.2e-05 0.0026 18.4 0.4 1 23 1608 1630 1608 1630 0.98

10 12 0.00015 0.0076 16.9 7.6 1 23 1636 1658 1636 1659 0.96

11 12 0.0003 0.015 16.0 5.9 1 23 1664 1686 1664 1686 0.98

12 12 0.043 2.1 9.2 8.2 1 23 1692 1714 1692 1715 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.015	0.73	10.6	0.3	1	23	1206	1229	1206	1229	0.95
2	12	0.00027	0.013	16.1	2.7	2	23	1405	1426	1405	1426	0.97
3	12	0.00017	0.0085	16.7	0.9	3	23	1434	1454	1432	1454	0.98
4	12	8.6e-07	4.2e-05	24.0	4.1	2	23	1461	1482	1460	1482	0.97
5	12	8.1	4e+02	2.0	0.4	5	23	1495	1513	1493	1513	0.96
6	12	2	99	3.9	5.4	3	23	1520	1541	1518	1541	0.93
7	12	0.22	11	7.0	0.2	2	23	1552	1572	1551	1572	0.96
8	12	8.2e-05	0.004	17.7	0.4	1	19	1578	1596	1578	1600	0.95
9	12	5.2e-05	0.0026	18.4	0.4	1	23	1608	1630	1608	1630	0.98
10	12	0.00015	0.0076	16.9	7.6	1	23	1636	1658	1636	1659	0.96
11	12	0.0003	0.015	16.0	5.9	1	23	1664	1686	1664	1686	0.98
12	12	0.043	2.1	9.2	8.2	1	23	1692	1714	1692	1715	0.95

Sequence Information

Coding Sequence: ATGGTCGACAGCGTGCAGTGCCCCGTGTGCACTTTGTACTTGCATGCGGGCATGAATCTGTCCGATCATTTGGAGACGCACCCCAAGGAGCAGGTCATCAAAGCCTTGGTCCAAATGACAATCAGTGGCAATAGTGGCATGGGGAGTGCCTTGGCGGCCGCCATGCTGACTGGTGGTGGAAGTGGCGTAAATTTAGATAACAATACCAGCTCCTCCACATCAACTGCTGATGTAAAACCAGCAATAGACGAGAACACTACAGCAAAAGCTACGCCAACTCCGGCCTCCCTGCCACCGCCGCCGCTATCCTCCTCCGCTCCCTCCTCTGCCAGCAGCAACAGCAAATTGAATAATCCACCGATTAAGGCACTGAAAAGCGCAACGCCTACGACTGAGGCGCCAGCCAACCCATCCGCACCCACCACAAGCAGTGTAACCGCTGTGTATCAGCCATCGTTGGCCACATCAGACTATCGCTACGACCAGCAGACGGCCCAGCAGCAACACGGGTTTTCGCGTACTGCCACCGCCACCTTGGTGATACCACAGGTGCCCCAGCAGCATTTCCTAGCCAGTCAGCAACAGCAACATGCGCTCTTTGCTCACCAACAGCAGTCTGGACTGAAATATACCTATGCGACCACGCTGCCGCCGCCACCACCATTGCAGCTCTTCGCACAGCAACAGCAACCGGCCACGCAGTCCCCATCACATCAAAAGCCGCCACCCGCCTATGGAGCCGCCATCAGTCAAATTCGATCTCAGCACAACCAAAACAAACAGCAGCAACACCAACAGCTAACCTTGCACCATAACTTAGCCCTGGCACCACCGACAACAGCTGCTGGAAAGCCCAGCAAAGTCCATTCGGAAGTATTTTTGAATCCCCCACCACCGCCACCGCCGCCACCTCCGGCAACGCAGTCGCAAACACATCACCAGCAGCAGTTGGCGTTAACAACATCATCCACAAGACTTCAGATTCAGCCATCGATTCCACTCCAAACGTACGCCTCAAATGGAAACATTTGCTCCTCAACCACATCAACGTCTGCTGCCGGTCGAGCTAGTCGTCAAACCAATTCACCCTTTGGGGCACTGCTCAATGCAGCGGCAGCTGCCGCCTGCGCATCACCCTCCTCGGCCTCGTCAGTGCTGCGTTTTGCCGAATCACCAGTGGCCCACTACCTGGAGCGTGAGAATGGTGATTTCATTGTCCAGGAGACACCTAAGCATATTGTGGAGTGCGTTGAGAAGGAGGATGGCGAATTCTCAGTGATTGAACGCATTTATCAGTCGCCGCCGAGTGTACTCCATATACACGATGAGAACGAGGATGAGAACGACGACGACGAAGAAGAAGACGAGGATGAGGCGGAGCAGGATGAGCCGTCCGATCATGTGGAGGACGGCGATGATGAGCAAGAGGAGAACAGTCGCTGCCGCAGTCGTAATGCTTCGAAAACAACAAAAAAGTCACGCAAGTCGAAGCCCAAGCGTACATCCAAGCAACCCGTATCCGATGAGGAGGAATTCATGAGCATAAGCAGCAGCGTTGAAAGTGAATCGGAAGGCGAGGAGCGAGATGAAAAGGTTAAGCAATTTGAGGTGCCACCACCGCCGCTCTGCACGGCTCCCTCAACAAGCAGTGCAGCCGCCGCTGCAGCCTCCGCCACCTCATCCACCTCAGGCGATGGCAATTCCAACTCCAATTCCACTTCCACTGCCACCAAGTCCAAGAAGAATCGTATTACCGTGCTCAGTGATGTTCCGCTGAATATGAACGAGTATCTGGATCTGATGGGCAACATTGTCGCCTCCAGCCGGATTGGGGCAGCACGTCCTTTTGCCGCAGTGGCACCCATTCCACTGGTGAAAGTGGAAAAGGAGGAACCACTGGACGACTACGACAATGTCACGCAGTCTGAGTGCACGCCGCCCGTGGAACAGAAGCCCACTTTGGGCACCACCAGCGTCATACGAATGGCCAGCACCAGCATCACAGCCCCCGAGGATCTCACGCAGACACCGCCAATGAAAATCGAGGTGGAAGTTGAGGGCACGACGTTGCTGCCTCAGCGCTTCTCGGCCCCGGCCCAGCAGCGCGGGCCCAAGAAATTAGTCATCAAACCAAAGGCCACGGCCACGACGACAACACAAAAGACTGACACCCCATCTTCCGGCAGTTCTGAGCAGCTGCTGCTTTCCTCCATATCAAATGGAACCCCTGCTACGGCGGCTCCCACCTCAGAGCTGGTCCAGATCAAGAGCGAGAAGTTGGACCCACCCACAACGGGCAGCATCCTGGAGAAGCATCTGACCACTCGCCAACACCACTCAACCATCAACGATGACGATGCTCGGGTGCTGCTGGAGTTTGCCAACTCTAAGCAGCCGCCGCCCTTAGCTGGTGGCGCCTCCAACACCACATTTGTAGTGGGTGCTGCCGCCCCAACCTGTTTCCCCTCGGCTGGCTCCGTTTTTGCCAGCAGCACAACAACCAACATGCAAAAAGCGTGTAAGCCGGGCGATGAATACATTCTGCCCGATAATAACCTGGAGGCAGATGAAATTGTGATATCCTCGTCTTCCTTTGCTTCAACCTCACAGAGGCATGCGCAGGCTGAGCTGGCCGCCACCACATCAGTGCAGCCGACCACAGCTGGCGCATCCTTCAATGAATTCAATTTTCTTTACCATCAGTCCACAACGACAACAACGACGACATCGGCGGTTGGTGCCTACTTCTCACCCTTTGCCAGACAGCATCACACGCAGCATGGAGCCAGCGAGGCTACCAATGCAGCGACACTGGCCTCCTCCTCCAGCAACTCCTCGGCCATGGATCACGACTCTATGAATGCCACATTCCGTGTGGCCAAAACGCAATCCTCGCAGTCCTGGTACCAGCCAGTGCAGCAGCATCAGCAGCCAACGGCAGCTGCGACTGGAGCGTCTTCATCCTCGCACAATCACGATATGGCACAGCCAACCAACTTTAATGCGGCCTTGGCTGCCGTCGATTGCTGCAGCGTGGCCGTTGACAGCGAAGTCAAGTACTTGGATCTGGATGCATGCAAGCGGGAACAGCTCAGCAACAGCAGTAATCTACCCTCAGCCTCGGTTTCGGCATCCACCACATCTTCTTCATTTGCCGGAGCTGCCACGGAGAGCAGTTTGGTTGGGGGTCTCAACATACGCACCGATGAGAAAATGCCCGCAAAGGGCGAAATCTCCGAGCAGGAAAGCAACTGCGACATTGAGAACTCCTGGAGTCAGTCGATGTATGGCGACATATCACAGCGGTACTTTAGAAACCAGTTTTCAGGCGGCTACAATCCCGACTGGCGGCAGGACTACTATCCGGCTCAGGATCTCAGTGCCCAGCAGCGGGAGCTTAAGCGCTTCGACTTCACAGCGGTCGACGAAGAGGCTTCCTGTAGCTCCAAGAAAAGCCATTTGCTCGATGGCGTAGATACACCCACCGCTTTTTCATCCTCATCGGCTTTGTTGGCTGGTCCACCAATAGCCTCCACATCCAGGGCAGCCGCTGAGGCGGCAGCAGTTGCAGCAGCAGCAGCTGCGGCCCAACGTAAGCCGCCGCGCCGCAAGATTTACAAATGTCCGCACTGCGAGGCAATATTCGAGAAGCTCAAGGATCGCAATGCGCACATGATTGGCGAGCACAATTATGTGCGCCAAAATCGCCGCCTGATTTGCACTCAGCCGCTGGACAATGCAACGATGCTGCCGCCACAGCAGCAGCAGCCATTGATGCCGCTCCAAGTGGACTCCAGCACTGTCAGCACTGGAATCATGCAAGAGGATTCTAAGGACGGCATTGTCAAGATCAAGCAGGAACAGTGCCCGGACAAGCATGAGTCAGAGCAGCATCTCCATACTCATGCCGAGCTGACGGATATCAAGACTGCCGAGCTGTTAAGTGATGGTGACATAAAGCCACCCAGTGTGACTCAACTAGACGAGAAGCCGGCCATAGTGCCGCTGGCTATGACCACGCCCGCTGCCAAGCTGGAAGCACTATATCGCATGTTAATTGCCTACAACGAATCGAAACTGGGCCAGGAGCGCAATAACATCAGTGAGCTGGAGCAGAAGGCCATGGAGAAGTCGATATTTCTCTGTTACGTTTGTCGCACAGATTTCCCCTCTGTAAAGCTCTACGATGCGCATCTCACGGAGCATCCCGCCGAGTGTTTTACCTGCGGCAAGAAATTTTATCGGTGGAAGAACTTCTCGCTGCATCTGAAGCGTCATCTTGGCTGGAAGGAGTTCGGCTGCTGTGTGTGTGACAAAAAGTTTGTGGTGCGTAGCGCCCTTGTGGAGCACATGCGCATGCATACCGGCCAAACGCCGCTCAAGTGTAAGATATGTGGCAAAAAATTCAAACGTTACTCCAACTTGACGCAGCATCGCAAGCGGCACACCAAAATGATGGTTCGCAAAAAAGAGTACGTGTGCCATTGCGGGGAGGTGTTGCCATCAAAGGCCCGCTTCCTGTGGCACAAAGAGACGCACGATCTGAAGCCCAAGTGTTGTCCCTACTGCTGCGATAGGTTCGTGCATGCCAACTCTCTGCGCCGCCATATACGACTGGCCCACTCGGACAAGTTCGACTACGCCGAGCCCATGGAGTGTCCCATGTGTAAGCAGATCTTTGCCAAGACCTCCATCAAGGCGCACATGGCCACGCACTCAACGGATCCGCAGTACGACTGCGCCATTTGCAATAAGAGCTTCTCCACCAAATGGAATCTCAAGATACACTCGTGGGTGCACGCCAACCGTACCGCCAAGCCATTCAAGTGCGAGTACTGCCCCAAGGCGTTTGTGCGCGAGCTGGACTTCAAGAATCACATCAATGCGCACAAGCAGATCAAGCCGTACACCTGCGAGTACTGTGGCTGCAAGTTCATACGCAAGTACAACTACATGCGGCATCGGCGAGAGCACCATGGCAACAAGAAGTTCACCTGCGACCAGTGCGACAAGTCCTTCCATCGACACTACTATCTCATCGAGCACCGGCGGATCCACACCGGCGAGCGGCCCTTCCACTGCACCATCTGCGGCAAGAGCTCCACCACAAAAACCAATCACAACAAGCATCTAAAGATTCATCACTCGCGCGACCCCTTCACCGTGGAGGTCTAA
Protein Sequence: MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTISGNSGMGSALAAAMLTGGGSGVNLDNNTSSSTSTADVKPAIDENTTAKATPTPASLPPPPLSSSAPSSASSNSKLNNPPIKALKSATPTTEAPANPSAPTTSSVTAVYQPSLATSDYRYDQQTAQQQHGFSRTATATLVIPQVPQQHFLASQQQQHALFAHQQQSGLKYTYATTLPPPPPLQLFAQQQQPATQSPSHQKPPPAYGAAISQIRSQHNQNKQQQHQQLTLHHNLALAPPTTAAGKPSKVHSEVFLNPPPPPPPPPPATQSQTHHQQQLALTTSSTRLQIQPSIPLQTYASNGNICSSTTSTSAAGRASRQTNSPFGALLNAAAAAACASPSSASSVLRFAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDENEDENDDDEEEDEDEAEQDEPSDHVEDGDDEQEENSRCRSRNASKTTKKSRKSKPKRTSKQPVSDEEEFMSISSSVESESEGEERDEKVKQFEVPPPPLCTAPSTSSAAAAAASATSSTSGDGNSNSNSTSTATKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGAARPFAAVAPIPLVKVEKEEPLDDYDNVTQSECTPPVEQKPTLGTTSVIRMASTSITAPEDLTQTPPMKIEVEVEGTTLLPQRFSAPAQQRGPKKLVIKPKATATTTTQKTDTPSSGSSEQLLLSSISNGTPATAAPTSELVQIKSEKLDPPTTGSILEKHLTTRQHHSTINDDDARVLLEFANSKQPPPLAGGASNTTFVVGAAAPTCFPSAGSVFASSTTTNMQKACKPGDEYILPDNNLEADEIVISSSSFASTSQRHAQAELAATTSVQPTTAGASFNEFNFLYHQSTTTTTTTSAVGAYFSPFARQHHTQHGASEATNAATLASSSSNSSAMDHDSMNATFRVAKTQSSQSWYQPVQQHQQPTAAATGASSSSHNHDMAQPTNFNAALAAVDCCSVAVDSEVKYLDLDACKREQLSNSSNLPSASVSASTTSSSFAGAATESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFSGGYNPDWRQDYYPAQDLSAQQRELKRFDFTAVDEEASCSSKKSHLLDGVDTPTAFSSSSALLAGPPIASTSRAAAEAAAVAAAAAAAQRKPPRRKIYKCPHCEAIFEKLKDRNAHMIGEHNYVRQNRRLICTQPLDNATMLPPQQQQPLMPLQVDSSTVSTGIMQEDSKDGIVKIKQEQCPDKHESEQHLHTHAELTDIKTAELLSDGDIKPPSVTQLDEKPAIVPLAMTTPAAKLEALYRMLIAYNESKLGQERNNISELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCCVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00915626;
90% Identity: iTF_00917656;
80% Identity: -