Lcol018927.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- -
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000290.1:61330-74806[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00041 0.02 15.6 3.4 1 23 290 312 290 312 0.98 2 11 0.002 0.098 13.4 10.5 1 23 319 341 319 341 0.96 3 11 0.0002 0.0099 16.5 6.5 1 23 347 369 347 369 0.98 4 11 0.00092 0.045 14.5 1.6 1 23 375 397 375 397 0.95 5 11 4.4e-05 0.0021 18.6 0.5 1 23 403 425 403 425 0.97 6 11 4.3e-05 0.0021 18.6 0.1 1 23 431 453 431 453 0.98 7 11 0.00025 0.012 16.2 2.0 1 23 458 481 458 481 0.97 8 11 0.1 5.1 8.0 0.3 1 23 487 510 487 510 0.94 9 11 0.00033 0.016 15.8 0.1 1 23 572 594 572 594 0.98 10 11 0.03 1.5 9.7 2.7 1 23 728 750 728 750 0.95 11 11 0.0088 0.43 11.4 4.9 5 23 763 781 755 781 0.92
Sequence Information
- Coding Sequence
- ATGTGCGCTGCACAGAGCAATCCGCCGCCCTTTGGCTACACCTGGGGCTTTGCAGACAACGTCAGCCGTACCGCTGAGTCGGTATTGGAAATATCGCCAAATATTAATTACACCGTCAGTGGGGAATCGATGCCCTATCTGTTATCCACTGATGGAACATTGGCCGTACAAAAGGATGTTAAAGGTGCACTCGCCGGCAATAAGGGAAATGTGGTGCGTCGCATGTTCGTGGTGAACGATTCCTCGTTTCCGCCTGGGACACAAAGAGTAATTACCACAGGTGGCACTTCAACGGTGGTCAAGAAACAGGACTCTACTCAACAGGTGTTGAGCATAAATTCACTTGATAAGAACTATCTCTTGGTCGATCAGGCCACAGCCGCAGCTGCAGCAGCCGCCGCTGCCGGCGATCCGGCGGCTGCCCATCATCATACCTTGACGAATGGCAGTCTAGTTGATGCCAAAACCGGACAAACCGTATTGACCACGGGAGCAGCTGCTGCTGCCGCTGCCAAATCCCATTTCGGCTCAATTGGTGCACTGCATCTCACGCAAGAGGAGTGCAACGAGATCTTAATCAAGCGGGCCATCGCTGCCGGCCACCATCAGACGCACACACTCACAACAGCCGGCGACGGGTCGCATCACCATAGCACGGGGCCAGGCGGAACACCAAGTGACATCCTTCCTGGTATTTCAGTTCAAGTACAGAAAGTAATTCAAGGACTTGAAGAGAACGAGGACTCACAGGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACTTTAGAGTTGTCCCCCAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACGATTAAAAAGGAACGCCCGTACAGTTGCGACGAGTGCGGCAAATCCTTTCTGCTCAAGCATCATTTGACCACGCACGCCCGCGTCCACACAGGTGGTGAACGTCCACATATCTGCACCCATTGCGGCAAGAGTTTCGCCCACAAGCATTGCCTGAACACCCATCTGCTGCTTCATTCAACGGATCGTCCGTATCAGTGCCAGGAGTGCAAAAAGAGCTTCACCCTTAAGCATCATCTGTTGACGCACTCGCGCGTCCATAGCCGGGATCGGCCTTTTGTGTGCCAGGAGTGCGGACGGGCATTTCCCCTCAAACGCCACCTGGTGACGCACAGTAAATTCCACGCAGGCGAACGTCCCTACGTCTGCGAGGAATGCGGTGAGAGTTTTGCCCAGGAGAATCACCTGATTATGCACTCGCGCTTTCACGGGTCCTTGAATCCCTTTGTTTGTGCTGAGTGCGGAGCCTCGTTTCCACGTAAATTCCAATTGGTAAATCACGGACGTATCCACGGCAAGATTCCACATTCGTGCACCGTTTGCGGTAAGGAATTTCTACAGAAGCGCACCCTAGTTTCCCACATGAGGCGAGTACATACCGGCGAGCAGGCTCATCCCTGCGTGAGCTGTGGCGAGGGTTTCCTTACCAAGGCTGAGCTGCATCAACATGTACGTGCAGCCCATAATGGAGTTAATCCCAATACAAGCAGCGCCACCATCATAGCCAATCAGCAGCAGCTACAACAGGCCCATCATCACCCCGGACCGCCGTCACATCCGCAGACCATCACCGTGGTGAGCAATCCAGCCAATTCCACCCTGTTGACGGTTTCCACAACCGATGCCAATGGCGTGGCACGTCCGCAGTTTGTTTGCCGCGAGTGCGGCAGCGCCTTCAATAGCCGCGAGGCTCTGGCCCTGCACTTGCGTCTGCACACGGGCGACAAAAGCCTGATGACCGATTTGTGCGCCCTGACAGCAGCGCTGCCCGGGCACTTTTTAAGCACGGCCAGCCTAAATCCGGGCACTGTCGTCACTGCCAATCCCAATTTGGTTGGCCAGAGTCCGGTGCCTGTGCAAATTATATCGTCCACCGGGCAGGTGATGTCACAGACCACCCTGGTGCAGGCCGCCAACTCCACACATCCGCAAGCCGTCGTCACCGCCGTGCCCACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGTGGCGCCCGCCAATAAACCCAAATCACATTTCTGTGCCAGCTGTGGCAAGGGATTCGCCGCCAAGCATGGCCTCATGCAGCACAATCGCCGGCATCCCAACGGTGGCTGCACGGTACGCACCCATGTCTGTGAGTGCGGCAAGGCCTTCTTCCAGAAGAATCATCTGATGCTGCATCAGCGCCAGCATTTGGAAACAAAGCCAGCCATATCGCAGCAACAGGAGGCCAGCAATTCAGCAGCAAATGGACAGCAACAACAGCAGCAGCAGCCCACACAGCAGGTTCAGGTGCAGATAATGCCCGATGGTCATATACATGGGAAGGTTATTAAGTACGAGATCTGTCGCAATGTATTGCAGGAGGATCAGGCAGCTCAACAGCAGCAACAGCAGGCCGATTAG
- Protein Sequence
- MCAAQSNPPPFGYTWGFADNVSRTAESVLEISPNINYTVSGESMPYLLSTDGTLAVQKDVKGALAGNKGNVVRRMFVVNDSSFPPGTQRVITTGGTSTVVKKQDSTQQVLSINSLDKNYLLVDQATAAAAAAAAAGDPAAAHHHTLTNGSLVDAKTGQTVLTTGAAAAAAAKSHFGSIGALHLTQEECNEILIKRAIAAGHHQTHTLTTAGDGSHHHSTGPGGTPSDILPGISVQVQKVIQGLEENEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRAAHNGVNPNTSSATIIANQQQLQQAHHHPGPPSHPQTITVVSNPANSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANSTHPQAVVTAVPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAPANKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEASNSAANGQQQQQQQPTQQVQVQIMPDGHIHGKVIKYEICRNVLQEDQAAQQQQQQAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00481685;
- 90% Identity
- iTF_00914713;
- 80% Identity
- -