Basic Information

Insect: Lordiphosa collinella
Gene Symbol: -
Assembly: GCA_018904265.1
Location: JAEIFV010000160.1:212728-217339[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.0048 0.24 12.2 1.2 1 23 201 223 201 223 0.96

2 26 0.069 3.4 8.5 3.3 1 23 229 251 229 251 0.97

3 26 0.31 15 6.5 0.4 2 23 283 304 282 304 0.94

4 26 0.023 1.1 10.0 4.7 1 23 376 399 376 399 0.94

5 26 4.1 2e+02 3.0 3.9 2 23 410 433 409 433 0.92

6 26 8.9 4.4e+02 1.9 0.6 1 19 439 457 439 460 0.91

7 26 0.22 11 7.0 0.4 2 23 471 492 470 492 0.96

8 26 0.003 0.15 12.8 0.5 1 23 568 591 568 591 0.96

9 26 0.088 4.3 8.2 0.1 1 22 600 621 600 621 0.96

10 26 0.031 1.5 9.6 3.4 1 23 630 652 630 653 0.96

11 26 0.0032 0.16 12.8 0.3 2 23 688 709 687 709 0.97

12 26 9.9e-06 0.00048 20.6 3.4 1 23 717 739 717 739 0.99

13 26 0.083 4.1 8.3 3.6 1 23 847 870 847 870 0.95

14 26 0.034 1.7 9.5 0.4 2 21 879 898 878 899 0.93

15 26 0.025 1.2 9.9 1.5 1 23 908 931 908 931 0.96

16 26 2.7e-05 0.0013 19.2 1.6 2 23 944 965 943 965 0.96

17 26 0.00023 0.011 16.3 1.2 1 23 972 994 972 994 0.98

18 26 0.31 15 6.5 0.2 3 23 1022 1043 1021 1043 0.94

19 26 0.018 0.86 10.4 4.7 1 23 1091 1114 1091 1114 0.96

20 26 0.046 2.2 9.1 0.8 1 23 1151 1174 1151 1174 0.97

21 26 0.0001 0.0051 17.4 2.1 1 23 1203 1226 1203 1226 0.98

22 26 9.1e-06 0.00045 20.8 0.2 2 23 1257 1278 1256 1278 0.95

23 26 0.00037 0.018 15.7 3.1 1 23 1284 1306 1284 1306 0.99

24 26 6.9e-06 0.00034 21.1 3.9 1 23 1312 1334 1312 1334 0.98

25 26 3.2e-07 1.5e-05 25.3 2.4 1 23 1340 1362 1340 1362 0.99

26 26 0.003 0.15 12.8 0.2 1 21 1368 1388 1368 1392 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.0048	0.24	12.2	1.2	1	23	201	223	201	223	0.96
2	26	0.069	3.4	8.5	3.3	1	23	229	251	229	251	0.97
3	26	0.31	15	6.5	0.4	2	23	283	304	282	304	0.94
4	26	0.023	1.1	10.0	4.7	1	23	376	399	376	399	0.94
5	26	4.1	2e+02	3.0	3.9	2	23	410	433	409	433	0.92
6	26	8.9	4.4e+02	1.9	0.6	1	19	439	457	439	460	0.91
7	26	0.22	11	7.0	0.4	2	23	471	492	470	492	0.96
8	26	0.003	0.15	12.8	0.5	1	23	568	591	568	591	0.96
9	26	0.088	4.3	8.2	0.1	1	22	600	621	600	621	0.96
10	26	0.031	1.5	9.6	3.4	1	23	630	652	630	653	0.96
11	26	0.0032	0.16	12.8	0.3	2	23	688	709	687	709	0.97
12	26	9.9e-06	0.00048	20.6	3.4	1	23	717	739	717	739	0.99
13	26	0.083	4.1	8.3	3.6	1	23	847	870	847	870	0.95
14	26	0.034	1.7	9.5	0.4	2	21	879	898	878	899	0.93
15	26	0.025	1.2	9.9	1.5	1	23	908	931	908	931	0.96
16	26	2.7e-05	0.0013	19.2	1.6	2	23	944	965	943	965	0.96
17	26	0.00023	0.011	16.3	1.2	1	23	972	994	972	994	0.98
18	26	0.31	15	6.5	0.2	3	23	1022	1043	1021	1043	0.94
19	26	0.018	0.86	10.4	4.7	1	23	1091	1114	1091	1114	0.96
20	26	0.046	2.2	9.1	0.8	1	23	1151	1174	1151	1174	0.97
21	26	0.0001	0.0051	17.4	2.1	1	23	1203	1226	1203	1226	0.98
22	26	9.1e-06	0.00045	20.8	0.2	2	23	1257	1278	1256	1278	0.95
23	26	0.00037	0.018	15.7	3.1	1	23	1284	1306	1284	1306	0.99
24	26	6.9e-06	0.00034	21.1	3.9	1	23	1312	1334	1312	1334	0.98
25	26	3.2e-07	1.5e-05	25.3	2.4	1	23	1340	1362	1340	1362	0.99
26	26	0.003	0.15	12.8	0.2	1	21	1368	1388	1368	1392	0.91

Sequence Information

Coding Sequence: ATGCTGCCCACGGATATTTGCCGTACGTGTGGACAGCAAAACACCAATTTGTTGCCGCTCTCCAGCTGTCTAGAGAAGCTACAGGAATTGACACAAATTCCGCTGCAGGAGGAGAGCGATGATGATAACTTGCCTCAACAAGTGTGTGGCGATTGTTTGGGCAGATTGGAGAATGCCTACGCCTTTGTAGAGCAGGCTAGAAAAGTGAATGGCGAGCTAATGGTGCGACTAAGGCAATGCCTGGAGGAGACACCCATTGACTTACCCCTGGAGCAAATCAAAATGGAAATGGAAGAGTCTGAAAATGAGGAAGCAAAGGCTCTGGGGACAGAAGATGGCATAAAATGGCAGCCGGACGCGTCGAGTGAGGAAAGTGAGGCAGAGGCAGGCGATTTAAATTGGACTGACGAAAATGAGGTAGATGCCAAACCGTATCAGTTAAGAAGGAGTCTACGCAAGATAAAACCACCACTAGACAGCGAGGAGGAGAAGGAGCGGCCCAGCTCAAACCACGAGGAGCAGCTGTCTGTGCCGCCCAAGCGTGGGCGTGGACGTCCTCCTCGTCTGGCCAAAACTCTTACTCTTAATTCCGAGGGTCGTCATGCATGTCAAGTGTGTGGAAAAACCTTCTCTTGGTTTAGAGATATGCAGCGACATGCCCGCATCCATTTTGAGGTGGCCTCCCATGTCTGTCCCAGCTGTGGCAAGACTTTTCTGCGCAAGGATAAATACCAGTTCCATTTACGAAGCCACGAGCGACGCCAAACCAAAGGTCAGTCATTGACTCTCAGCAAGGAGTGGAGATTTGCGCAGCGTTTGTATAGCTCGGGAGCACTCAAATGCTTGGAGTGCAAATTGTGTGGTTTAAATTGTGCAAAAATTCAGGAATTGAAAACCCATGTGGAGGGTCATGCTCAGCAGGAAACCCTGGGCCAACTCTCGCTGGAACAGGAGGTGATCAAAGAACTATACCCCAATCATCAAATGGAGCAGTTGCCGCAAATTAAGGAACATATCTCTAAAGAGCTCACTCAGGGACATTTGCAGCAATTTTGTTCGGTGGTCAATTCCTTTGGCTATGAGTTGTCTCTTAGTGACTCGGATGATGAATTGGCTGAATCCAATTATGAATGTGTAACCTGCCACTTAAACTTTAAACGCAAACATCGCCTAATGCGCCATACGCTGGAGGAACACACTCAAACTAATGCGGTGCTGCCTCAGTTACGTTGTAATCTCTGCCAGATAGGCTTTGTCTGTCCCAAGCTTTTTGAGCAACACCAGCGTACACAATGTCATTCGAAAATGAAACGCTATCGTTGCCGCAATTGCCCGGGGAAATTCATGTGGCTGGAGAATCTAGAGAGACATAGTTGTGTTCAGTCGCAGTTGGAGTCTGTAAAGCAAATCCAATGCTGCCTCTGCGATGCTCAGTTACCTAGTCTGAACCAACTGAGAGCCCATTTACAAAATCATCGGGATGGCAGCACCGGCATTGATTCTCAACATCAGGCCACCTTCTTTCGTTGCTATTACCCCAAGGGCTTGGCTTGTACTCAGTCCGAGTTAATGGCACGCATTGCGGGTGACTATGAGGCCCAGGATTATGGTCGCTATTACAATGCCTGCTCTGGCAGTGGCCGAGAAATGGATCTCTATGACTCGGATACGGATATGGATGAAAGTGAAAAAAAGATTCAACACATTTGCTCCTTGTGTGGTGAGATAACCAACAGATTAAGCAAGCTTTTGGAGCATCAGCAAACTGCACACTCACAAGAGGACGTCCCCTTGCCCTACACCTGTGAGGATTGTGCCAAGGGTTATGTCTCGGACTTGCTGCTGCAACAGCATAGACGTCGTAATTGTAACAAACGACATGCTAAATATCAATGCCAGTTGTGCCAGCAGCATTTCGTGTGGCAGGCAAACTATGTGCAGCATCAAAGAGTGCATCATCATCATCAGCAGGAACAGCAGCAGGCCGCCCAGCAGGATCATAAGCCTGAGCCAGAGGAGGGTGAGCTGACCAGCAAGCGGAACAACTCTGCGGCCAAACTGCAGTGCGATGAGTGTGAAAAGGTTTTTATCTGGGTCAAGGATCTTAATCGTCACAAGCGTATGCATCTGCCCCAGACGGCAGCTCAATATGAGTGTTCTTACTGTGATCGCAAGTTCCATCGCAAAGACGGCCTCAAATCCCACCTACGCATACACAGCGATCAGCAGCAGCAAGAGTTGGAGAAGAATGAAGATTACTCCACGGCAGCTCAACCTAATGTGACACTTCCACAACTGGGTCGTCCACATGGTTGCAAGCAAATCCAATGCATGATCTGTCTGTCGCAGCACTCTAAAATAAGAGATCTGCGTAAGATCAACTCATTGAGAGAATCAAAAGTGATGTGGCCAAAGGGCTTGGAGCTAGACAGATTTATATCCATTACGAATGAGGCAGGTATGGAGCTTAGCTTGGAAAGTAGCGAAACAGAAACGGATTCCGAGGAGGAAGAAACCAAAGCAGTTGGACAGGAGGCCTATGAATGTAATCTCTGTCATTTGAAAATGAAGCGAAAATATCAACTGTATAACCATCAGTTGGAGCAGCACAACTGGCCGGAAGAGGGTTCGAGTGTTTGTCCACACTGTCAGGCCCGCTTTGTAAGTGAACTGCTGCTGGAACATCATTTGAAAAGCTTGTGCCGGAATACACACAAACGTTTCCAGTGCCGCAAGTGTCCGCTACGCTTCCGCTGGCGGGAGAATCTCAAATTGCATACAAATCTCTCACATCAGCCCAGGGAAACGGGCGAGGAGGCGCCCGAGTTGAGTTGCCAGCAGTGCAATCGTAGCTTTAAAATGCAAAAGGATCTCACCCGTCACATACTCATGCATGGCCAGGAGTCGAGCATTTATCGTTGTCGCTGGTGTGCCCGTCGTTTCTATCGCAAAGCCAATCTTCTGCAGCATATCGAACGTCATGGCATAGGCGCCAGTCAGCTGCCCTATGCCGAGGCCCTGCTTAATGCCTATGGCCAGGCCAATGGTCCCAAAGTGATCCTCTGCAAGATGTGTGAGATGAGCTTTGGCAGTATACAAGCTCTGCGCCTCCATTTGGTCAGTAACCATCAGTTGACCCTAGATTTGGTCACACTGCAGAACTATTCCATTACCAATCAGGCGGGTTATGAACTGCATCTAGAGGATTCGGAAACGGATGACGGAGAGGGTGCTGCAGAAGTGCTCAAAGCGGAGGGTACACCCGCCTGCTACACCTGCAGCATGTGTCAACTGAGATGTGTGAGGAAATATGAGCTCCATCAGCATCAGCAGGCCATGCATCGTGTGGAAAAGGTTCCCCAGGGCTGTGATCAATGCATTTTCAAGAGTGTTTCCTCCGATCTGATAGCCCATCATAAGCGGGTGCAGTGTGGCAGTCAGGAGAAACAATTTAAGTGCGTCAAATGCTCCTACAAATTCATGTGGGAATCCAATCTGCTGCTACACATGCAAATCCAGCATGGTAAGGCCGAGGATGAAGAACCACCACCGCCAGAGCAAACAAATGCCAGCCAGGAAGATGCCAAAGTAGAAACCCAGCAAATCTTTCAGTGTGCCCAGTGTCCTCGCAAATACAATCGCAAGGATCGTCTCACAGCGCACATGAAGAAATTCCATAATCCTGCTCTAAGCAAGGACACCGTTATACAGTCTCCTGCTGCTGCTCCCCCCACTTCCACTTTACCAGCCAAACAGCCGAAACGTTTTCTTTGCGCCTTCTGTGGCAAAGCCGTCAGCTCATCCTCCAATCTCATTATACACATGCGACGCCACACCGGCGAGAAGCCATTCAAGTGTGACTTCTGCGACATGGCCTTTCCCCGTTCCTCGGATCTTCAGTGTCATCGACGCACTCACACCGGCGAACGGCCGCATGTGTGCACCGTCTGTCACAAGGGCTTCGCGCGTTCCTACAAACTGCAGCAGCATATGCGGATACACAATGGCGAACGACCCTACAAGTGTACCTACTGCGAGAAGAGTTTTACCCAATCCAATGATTTGACCCTGCACATACGGCGCCACACGGGCGAACGTCCATATCAGTGTGGCACTTGTGGCGAGCGTTTTATTCAGGGCACTGCCTTAAAGAATCATCGCCTGCAGCAGGGACACTATGAGGAGGGCAGCCAAGGTGCAGGAGACCCGCCACCAAGACGCACAGTTCTTGAGCAGTTTAAAGGAGAGTGA
Protein Sequence: MLPTDICRTCGQQNTNLLPLSSCLEKLQELTQIPLQEESDDDNLPQQVCGDCLGRLENAYAFVEQARKVNGELMVRLRQCLEETPIDLPLEQIKMEMEESENEEAKALGTEDGIKWQPDASSEESEAEAGDLNWTDENEVDAKPYQLRRSLRKIKPPLDSEEEKERPSSNHEEQLSVPPKRGRGRPPRLAKTLTLNSEGRHACQVCGKTFSWFRDMQRHARIHFEVASHVCPSCGKTFLRKDKYQFHLRSHERRQTKGQSLTLSKEWRFAQRLYSSGALKCLECKLCGLNCAKIQELKTHVEGHAQQETLGQLSLEQEVIKELYPNHQMEQLPQIKEHISKELTQGHLQQFCSVVNSFGYELSLSDSDDELAESNYECVTCHLNFKRKHRLMRHTLEEHTQTNAVLPQLRCNLCQIGFVCPKLFEQHQRTQCHSKMKRYRCRNCPGKFMWLENLERHSCVQSQLESVKQIQCCLCDAQLPSLNQLRAHLQNHRDGSTGIDSQHQATFFRCYYPKGLACTQSELMARIAGDYEAQDYGRYYNACSGSGREMDLYDSDTDMDESEKKIQHICSLCGEITNRLSKLLEHQQTAHSQEDVPLPYTCEDCAKGYVSDLLLQQHRRRNCNKRHAKYQCQLCQQHFVWQANYVQHQRVHHHHQQEQQQAAQQDHKPEPEEGELTSKRNNSAAKLQCDECEKVFIWVKDLNRHKRMHLPQTAAQYECSYCDRKFHRKDGLKSHLRIHSDQQQQELEKNEDYSTAAQPNVTLPQLGRPHGCKQIQCMICLSQHSKIRDLRKINSLRESKVMWPKGLELDRFISITNEAGMELSLESSETETDSEEEETKAVGQEAYECNLCHLKMKRKYQLYNHQLEQHNWPEEGSSVCPHCQARFVSELLLEHHLKSLCRNTHKRFQCRKCPLRFRWRENLKLHTNLSHQPRETGEEAPELSCQQCNRSFKMQKDLTRHILMHGQESSIYRCRWCARRFYRKANLLQHIERHGIGASQLPYAEALLNAYGQANGPKVILCKMCEMSFGSIQALRLHLVSNHQLTLDLVTLQNYSITNQAGYELHLEDSETDDGEGAAEVLKAEGTPACYTCSMCQLRCVRKYELHQHQQAMHRVEKVPQGCDQCIFKSVSSDLIAHHKRVQCGSQEKQFKCVKCSYKFMWESNLLLHMQIQHGKAEDEEPPPPEQTNASQEDAKVETQQIFQCAQCPRKYNRKDRLTAHMKKFHNPALSKDTVIQSPAAAPPTSTLPAKQPKRFLCAFCGKAVSSSSNLIIHMRRHTGEKPFKCDFCDMAFPRSSDLQCHRRTHTGERPHVCTVCHKGFARSYKLQQHMRIHNGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYQCGTCGERFIQGTALKNHRLQQGHYEEGSQGAGDPPPRRTVLEQFKGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00919976;
90% Identity: -
80% Identity: -