Lcol020221.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa collinella
Gene Symbol
egg
Assembly
GCA_018904265.1
Location
JAEIFV010000692.1:122328-129282[+]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.7e-14 2.7e-10 39.9 0.0 5 75 1037 1100 1034 1102 0.91

Sequence Information

Coding Sequence
ATGGATGCGGAGTCCACTGCTATGGACTGTTTGGAAGTAGAAGACAAAGCTTCCAATGAGATTCCAAATGCAAGAATAACGGGACAAGATAAAGTCCGACCGGCTTCGGTTGAGAGTGAAAATTTAGATGCCGACAGCAAGCAGTCACAGGGGGAGGGGGTGGAGGCAGAACAATCTAACCCGAGCGAGGGTGATATTGAAATGCAGGACTTAGCTCTAAATGAGGAAAATTCTGTAGAATCCACTGGCCATCTCAGTGAGAATCAAGAGGAGGACTTGCCGGAGAAGGAAGAGCAGAGTCAGCTAAAGAAAGTTGAAAAAACGGCAGAGGAGCAGCTGCCTGAAGAGGATCAGCAGGCTGAAGAGGAGCAGCAGGGTGAAGAAGAGAAGCAGCCTGAAGAGGAGCAGCTGTTGAAAGAGGTTGAACAGACCGAGAGAGAACAGCTGCCGAAGGAGGACCAAGCGGAGCTGCAACCGGAGGAGGATCTTCAGTCGGCGGAAAAGAAGCAGCCAGAGAAGGAGGAGCAGCCTGAGAAGGAGGAACAGCAAGAGGAGGAGCAGCCAGAGGAGGAGCAGCCAGAGGAGGCGCAGCCAGAACAGGAACAGAAGGAGCAGCAATTTGAGGAGGCCAAGCAAAAGGAGTCCGAAGCTGAAGCAAGCATTGAAATTATAAGTAGTCCCTTGGCTGCTGACCCCGAAACCACCTCTAGCGGAGATGCGGTTGAGGAGGACTCTGCAAAGTCTGTGGCTGATGACTTGGACAGCAGCGTGGAACTAATTGAAAGTCCCAAGACTACTTCAGAACTTGATCTGGCTACAAATGCAGATTTGGAAACTGATGAAAAAGATAAACAAGAAGAAGGAAATCGTAAGTTATCCGAGTCGGATAGCAGCATAGAGCTTATAAGTAGTCCTCGAGCAGATGAAGAAGAAGCAAACTTGGAAACTGAGCCAGCGCCCGAAGAAACAGCGACTAAAGAGCCCAAAGAAGCCAAGGAGAAGACAGTAGAAGAAGCAGGGGAAAAGGAAAAACCCAAAGATTCTGAAGCTCAGGACAGCATTGAATTGTCAGATGATTCTTCAGACCTAGAAGATACCTCTAAAAAGCCAAATGAGAAAGAAACTGCACAGAAAGTGCAAGAGAAAAGTTCTAAGGAGAAAAACGTGGTCAGTAAATCGATTCCCATGGAAGTAGATGAAGCAAGCGTAACAAAGCCGGCTGCAGACAAGATTTCTACAGATAAACTCAAGAAACTGAAAGAAGATCAAGTAAAACCCATGGACACAGATGAAGTCAAGGACGCAGAGGTGTTCATAGTAGATCTAGAAGAGAAACCTGAGCCTAAAGTCCCTACAAGTATTGCTAAAGACACACCTGAGGTGGAGCCCTCCTCCGATGGTGACATCTTTTACAACAAAGATTGCATCAACTGTAATTGCAGTCGGACGCACAAACAATACATTTTGGCCAGTGTTTCGGCCTTGAACTTATACAAAGTGCCTCGAAAAACGCACAAGCGTCAATACATTTGCCTGGGCTGCCATGACTTGGCAATGGATATGTATGAGGACTATGCCGCTCATTTGGTGGCCAAACAGCCTCTGCTCTTGAGGGAATTTAAACAGGAACATGCAGACTTTGTGGCTTTGGATAGCAGCGATGAAGAGGACAGTGAAAATGAACCTGCTAAACCCGAATTTTCGTCCAAGGACTTAAAAGTAATTGAAACTGAGCTGGAGGATGCCATTAAAAGTGTTTTAAACCGCGTGGAATTTCCAAATCAATTGTCCTGGTCCAAGTCCATATTGCAAGCAAAATCTCAACGTTTGGAACGTCAATTCAAGTTGGTCGATGTGGAACTGGGCAAGCTACAAAACACAGCAGATAAAATGCATTTCGCTCTATACAGTGCCTGCCAGGTGGTGCATAGGCATATGCCACCTTTGGATTTGTATCAGAATATGGCCGATTATGTGCAGGTGCCACCCGCCGGAGAGATTGAACGACCGCCCATTAAACTGGGTGACACTTACTATGCGGTCAAGAACAAGGCAATTGCCAGTTGGGTTTCCATCAAGGTCATCGAACTATCCGATAATACCTTGGTAAATGGCAGCATAATGCAAAGCTATAAGATCAAGTACCTTAATACGCCCTACCAAATGCTTAAGACTGTCACCGGCAAACACATAGCCTACTTTGAGCCTCCACCTGTGAGACTTACCATAGGCACAAGAGTCATTGCCTTCTTTGATGGCAACACCTTGATACGTGGCAAGGAGCGAAAGGAGAGGGGCGTGGTGCAGAGCGCCTTCTATCCGGGCATCATAGCCGAACCCTTGAAGCAGGCCAATCGTTTTCGCTATTTAATTTTCTATGACGATGGCTATACCCAATATGTGCAGCACAAGGATGTGCGTTTGGTGTGCCAGGCCTCGGAGAAAGTATGGGAAGATGTGCATCCAGCTTCGCGTGATTTCATACAGAAATATGTGGAAAAGTATTCGGTGGATAGGCCCATGGTGCAGTGCACACGTGGTCAGAGCATGAACACAGAATCGAATGGAACTTGGCTGTATGCCCGTGTCATTGATATCGACTGCAGCCTGGTGCTGATGCAGTTTGAGGGGGATAAGAATCATACAGAGTGGATCTATCGTGGTTCATTGAGATTGGGTCCGGTGTTTAAGGAGACACAAAATGCTCTAAACAGCATGCAGCATCAGACCAGAGTGCCTAGGCGCACCGAACCCTTTATACGTTACACCAAGGAGATGGAGACCAGTTCCATGCAGGTGAATCAACAAATGCGTGCCATAGCACGTAAAAGCAGTGCTACTCCCCAGTCAAATGTACCCTCTGCCGCCTCACCAGCAGCAGCTGCCTCGGCAGCGGCCAAGAATCAGAACCAGAATGCTAGCACCAGCAGCAGTGGCAGCACCGTGCGTCACCTAAACAACTCCACCATTTATGTGGATGATGAGAATCGACCCAAAGGTCATGTGGTTTACTTTACAGCCAAACGGAATCTCCCTCCCAAAATGTACAAATCGCATGAATGTTCACCAAATTGTCTGTTCAAGATCTTTCATCGCCTGGACAGCTATAGCCCTTTGGCCAAGCCACTACTCTCCGGCTGGGAACGTTTGGTGTTGCGTCAGAAGATCAAGCGAAGTGTGGTCTATCGTGGTCCCTGTGGCAAGAGTTTGCGTAATCTGGCCGAGGTGCATCAGTACCTCCGAGCCACCGATAATGTTTTAAATGTGGAAAACTTTGATTTTACCCCCGATTTGAGATGCCTGGCCGAGTACTCCATTGACCCGACCATTGTCAAAGAGGCCGACATCTCCAAGGGACAAGAAAAAATGGCCATTCCGTTGGTCAACTACTATGACAACACCTTGCCACCGCCCTGCGACTATGCCAAGCAGCGCATACCCACCGAGGGTGTCCACTTGAATCTCGATGAGGAGTTCCTGGTGGGCTGTGACTGTGAAGACGACTGTTCGGACAAATCCAAGTGCTCCTGCTGGCAGTTGACGGTGGCAGGTGTAAAATACTGCAATCCCAACAAACCGCTGGACGAGGTTGGCTATCAGTACAAGCGTTTGCATGAGCATGTGCCCACTGGCATCTACGAGTGCAACTCCCGTTGCAAGTGCAAGAAGAATTGCCTTAATCGTGTGGTCCAGCATTCGCTGGAGATGAAACTGCAGGTGTTCAAGACCTCGAATCGGGGCTGGGGATTGCGTTGTGTCAACGACATACCCAAGGGAGCCTTCATATGCATCTATGCGGGACACTTGCTTACCGAAACCATGGCCAATGAGGGCGGACAGGACGCGGGTGATGAATATTTTGCCGATTTAGATTACATAGAGGTGGCCGAGCAACTCAAAGAAGGCTTTGAATCAGATGTAGAACACTCGGAGCCAGAGCCAGATGAGGATAACTATGGGCCAGATGGCGAAGATGATGATGACTTTAGGCCAGCCAAATATTATGCACCTCGCCGTTCGGAAGGCCGCGAAAAGATGCGTGCCTCACGCAGCAGTTCGACGCATAGCAACGAATTGGACTCGCAAGAGCGTGCGGTCATTAATTTCAATCCCAATGCAGATCTAGATGAAACGGTGCGTGAAAATTCAGTACGACGACTGTTTGGCAAAGACGAGGCCCCCTACATAATGGATGCCAAGACAACCGGCAATTTAGGGCGCTACTTCAATCACTCTTGCAATCCCAATTTATTTGTGCAGAATGTTTTTGTGGATACACATGACTTGCGTTTTCCCTGGGTGGCCTTCTTCTCGGCCTCACATATTCGTTCGGGCACTGAGTTGACCTGGAACTATAACTATGAAGTAGGCGTGGTGCCCGGCAAGGTGCTGTATTGTCAATGTGGAGCCACCAATTGTCGCATACGTTTACTTTAA
Protein Sequence
MDAESTAMDCLEVEDKASNEIPNARITGQDKVRPASVESENLDADSKQSQGEGVEAEQSNPSEGDIEMQDLALNEENSVESTGHLSENQEEDLPEKEEQSQLKKVEKTAEEQLPEEDQQAEEEQQGEEEKQPEEEQLLKEVEQTEREQLPKEDQAELQPEEDLQSAEKKQPEKEEQPEKEEQQEEEQPEEEQPEEAQPEQEQKEQQFEEAKQKESEAEASIEIISSPLAADPETTSSGDAVEEDSAKSVADDLDSSVELIESPKTTSELDLATNADLETDEKDKQEEGNRKLSESDSSIELISSPRADEEEANLETEPAPEETATKEPKEAKEKTVEEAGEKEKPKDSEAQDSIELSDDSSDLEDTSKKPNEKETAQKVQEKSSKEKNVVSKSIPMEVDEASVTKPAADKISTDKLKKLKEDQVKPMDTDEVKDAEVFIVDLEEKPEPKVPTSIAKDTPEVEPSSDGDIFYNKDCINCNCSRTHKQYILASVSALNLYKVPRKTHKRQYICLGCHDLAMDMYEDYAAHLVAKQPLLLREFKQEHADFVALDSSDEEDSENEPAKPEFSSKDLKVIETELEDAIKSVLNRVEFPNQLSWSKSILQAKSQRLERQFKLVDVELGKLQNTADKMHFALYSACQVVHRHMPPLDLYQNMADYVQVPPAGEIERPPIKLGDTYYAVKNKAIASWVSIKVIELSDNTLVNGSIMQSYKIKYLNTPYQMLKTVTGKHIAYFEPPPVRLTIGTRVIAFFDGNTLIRGKERKERGVVQSAFYPGIIAEPLKQANRFRYLIFYDDGYTQYVQHKDVRLVCQASEKVWEDVHPASRDFIQKYVEKYSVDRPMVQCTRGQSMNTESNGTWLYARVIDIDCSLVLMQFEGDKNHTEWIYRGSLRLGPVFKETQNALNSMQHQTRVPRRTEPFIRYTKEMETSSMQVNQQMRAIARKSSATPQSNVPSAASPAAAASAAAKNQNQNASTSSSGSTVRHLNNSTIYVDDENRPKGHVVYFTAKRNLPPKMYKSHECSPNCLFKIFHRLDSYSPLAKPLLSGWERLVLRQKIKRSVVYRGPCGKSLRNLAEVHQYLRATDNVLNVENFDFTPDLRCLAEYSIDPTIVKEADISKGQEKMAIPLVNYYDNTLPPPCDYAKQRIPTEGVHLNLDEEFLVGCDCEDDCSDKSKCSCWQLTVAGVKYCNPNKPLDEVGYQYKRLHEHVPTGIYECNSRCKCKKNCLNRVVQHSLEMKLQVFKTSNRGWGLRCVNDIPKGAFICIYAGHLLTETMANEGGQDAGDEYFADLDYIEVAEQLKEGFESDVEHSEPEPDEDNYGPDGEDDDDFRPAKYYAPRRSEGREKMRASRSSSTHSNELDSQERAVINFNPNADLDETVRENSVRRLFGKDEAPYIMDAKTTGNLGRYFNHSCNPNLFVQNVFVDTHDLRFPWVAFFSASHIRSGTELTWNYNYEVGVVPGKVLYCQCGATNCRIRLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00915330; iTF_00914501; iTF_00917208; iTF_00919816; iTF_00918128;
90% Identity
-
80% Identity
-