Lcol014355.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- Mblk-1
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000047.1:688355-714374[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-12 3e-09 36.7 0.0 2 45 259 303 258 303 0.92 2 2 7.3e-19 1.7e-15 56.6 0.0 1 43 691 734 691 736 0.95
Sequence Information
- Coding Sequence
- ATGGGTCGCAGGAAATGGAAACATTATCAGGAGCAACTGACGCGCACCCAATACAGCAGCAGCAGCAGCAGCCAGTGTAAACCACAGAACCACCGTCTAGACCAGCCCAACGTTCCACTGCAGTTTGAGGAAGATTTTGATACCGATAACCAAACATCACACGATTCAAGTGCAACATCACCATCACGTACACCAACACCATCACCACCGCCAGAGCCCAACGATTGGATACCGTCTGACAAGTGCAATTTCTGTATTAACGGTCGCTTGCTAACGGTGAACGCCCAAGGCGAATTGGTGGCCGAAACGGCGTTAGCGGCCAGTAGCCACAGCGGCATAGTGCCGCAGCACGACACTGACAGTGACAACTCGAGCGCATCACTGCACCACAACAACAACAACAGCAACAACAGCAAGAGCAGAGCAGCCTCTCAAGAACTTTACAAGCTGCTCACCCAACAGGCAGCCAAAATGACATCAATGGACTCCATGGCCGCACAGCTGGCACAATTCTCACTGCTGGCCGCCGATACCAATCAGATCTACTCGCTGGTCAATCAACAGAATGCTAACTCGGTAACGCCAACTACCTCAGAAGATACTTCTGCCGCTGCAAACAGTCCCACACTCAAAGATACGCCCAGTCCCAGTGCAGACGCTCCGCTGGATCTTAGCAGCAAACCATCGCCAAACTCATCAATTAGCGGCGATGTCAAGTCCATCAGGGCGCTCTCCGACTGTGCCACGCCCATTCCCTCAGCTCGACGCTACAGCGATGAGGATCTGAATCGGGCGCTGCAAGATGTCCTGGCCAATAAATTGGGCACACGCAAAGCAGCCAGCCAATACCATGTGCCGCGCTCCACGCTGCGTAATAAGCTCTACAAGATCACGCTGGACGCCAAGCGTTTAAATGCACGAACGCCACCCATATTGCAGCAATTACAGCACGAACTGGAGCTGGACGAGCAGGATGATTCCGAAGGCGAAGAGGGTGAAGGCAATAGCAATGCCTCAACACCAGCACCGGCCTTCCGTTTGGCGGAGAATAATGGCAGCGATTTGGGTGATGAACTGGAGACTGGAAATATATCGCCAAAATTGCCCAGAGTGCAGGGTAGCAGCAACAGTGCTACGGCTGCTGCTGCTGCAGCGGCGGCAGCTGCCTCGGCTGCAGCGGCGACTGCCTCTGGCCTGCCCATGGCTTTTGATGCCAATTTCCTGCTACAAACTCTAGTGCTGGCAGCGGGTATCGGTGCCATGCCCAAGCTGGACGAGACACAGACCTTGGGAGAGCTGATTAAGACAGTGCTGGTGGCCAATAGTGGGGGTATCATGTACGAAGCGCTGACCAATGCGCTGGCTGCGGGTCATGAGAGCAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCGTTTATCGGCAACGTCTACCAAAGTCTGAAACGCCCGAGACCAGCTCCTCGCTGGATGCCAATGAGCCAGCCGAGGATTCTATTATCAAGATTCCGTCCTTTAAGGCCAGCGGCCCGGCCAGTATCTCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTCCACACTCCGGCTCACCCATGCTGGCTGCTAACCTGCTCTCGCCCTCATCCAGTTCCATACAGAAGATGATGGCCAGCAATATACAAAGGCAAATCAATGAGCAGACCAGCCAAGAGGCGTTGGCCCTGCGCAACGGCAACACCAACAGCGAAAACGGTGGCGCCCCCTCAACCTCAACCAGCAGCAGCAGCAGCTACAAGAAGCCCAGCATATCGGTGGCCAAAATTATAGGCGGCACCGATACCTCACGCTTTGGCGCCTCGCCCAATCTGCTGGCCCAGCAGCATCATGCCCATCTGCCTGCCCATCATGCAGCCGCCGCCGCCCATGCACATGCCCATCAGCAACAGTTGAGCGCACAGGATGCGGGCAAGGGCACCCGACCCAAGAGAGGCAAGTATCGCAACTATGATCGCGACAGCCTGGTGGAGGCCGTCAAGGCGGTGCAACGTGGCGAGATGTCCGTACATCGAGCGGGCAGCTACTATGGCGTACCCCACTCCACTCTGGAGTACAAGGTCAAGGAGCGACACTTGATGAGACCGCGCAAGCGTGAGCCCAAACCGCAACCGGATCTGGTGGGTCTGACGGGCGCGGCCAATAAGGTGGGACTCAATCACTTGGAGAAATTGAAGGCCGCCCAACAACAGCAGAGCAACAGTGGCCAGGCCAGCTCCAAGCTGAGCAATGCTTTGAAGAACAACAGCCAGGCGGCGGCAACAGCGGCGGCAGTGGCTGCCAATGGCCTCAAGCTGCCCATGTTTGAGCCCGGCTTCCAGCAGAATATGTTCTGGCCACAGCCACAGGCGCCGGCCAACTATGGTCTGGACTTCAATCGCATGGCAGAGGCCATGCGTCATCCGGCCAGCAATCATCAGGCACCCATGAAAAGCGCCCTGGAGCTGGCCGAGAACATGTACGATGGCATCATACGCAAAACCCTGCAGAATGAGGGCGGCAATCCTGGGGCCAGCAGCAATGGCAACGCCCTGCTGGATCAGTTGCTGGTGAAGAGGACACCCCTGCCGTTTACCAATAACCGTAGCAATGACTACATAGCCACCTGTTCGAGTAGTGCGGAGAGCATAAAGCGTGCCGGCAGTCCTTTAGGTGCCTATGCGGACATCAAGCGAGAGCGTTTAAGTGGCGATAGCAATGCCAGCAGTGATGAGGAGCTAGAGCATTCCAATAACAACAATAACAGTGACCTGGCCTACAACAAAAACAAGAGCAGCAGCAGCAACAACAACAATGGCAATGGACGCAGCAGTCGCATGACCTCGCGAGACTCCGAAACGGATGTCAGTAGCCTGAAGAGCGAGCAATCCCTTAGCCACCACAACAAAATGATGGATCTCAATGGCGGCGGCAGCAGCAGCCTCATCAAATGCGAAACAGAGGCACCCAGTCCTCAGGGCAGTACCTCCATACTGCAGGAGAAACTGGCACAGATCAAGGCCGAGCAGGAGCAGTTATAG
- Protein Sequence
- MGRRKWKHYQEQLTRTQYSSSSSSQCKPQNHRLDQPNVPLQFEEDFDTDNQTSHDSSATSPSRTPTPSPPPEPNDWIPSDKCNFCINGRLLTVNAQGELVAETALAASSHSGIVPQHDTDSDNSSASLHHNNNNSNNSKSRAASQELYKLLTQQAAKMTSMDSMAAQLAQFSLLAADTNQIYSLVNQQNANSVTPTTSEDTSAAANSPTLKDTPSPSADAPLDLSSKPSPNSSISGDVKSIRALSDCATPIPSARRYSDEDLNRALQDVLANKLGTRKAASQYHVPRSTLRNKLYKITLDAKRLNARTPPILQQLQHELELDEQDDSEGEEGEGNSNASTPAPAFRLAENNGSDLGDELETGNISPKLPRVQGSSNSATAAAAAAAAAASAAAATASGLPMAFDANFLLQTLVLAAGIGAMPKLDETQTLGELIKTVLVANSGGIMYEALTNALAAGHESNXXXXXXXXXXXXXXXXXXXAAVYRQRLPKSETPETSSSLDANEPAEDSIIKIPSFKASGPASISPXXXXXXXXXXXXXXXXXXXXXXXXXXSPHSGSPMLAANLLSPSSSSIQKMMASNIQRQINEQTSQEALALRNGNTNSENGGAPSTSTSSSSSYKKPSISVAKIIGGTDTSRFGASPNLLAQQHHAHLPAHHAAAAAHAHAHQQQLSAQDAGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQPDLVGLTGAANKVGLNHLEKLKAAQQQQSNSGQASSKLSNALKNNSQAAATAAAVAANGLKLPMFEPGFQQNMFWPQPQAPANYGLDFNRMAEAMRHPASNHQAPMKSALELAENMYDGIIRKTLQNEGGNPGASSNGNALLDQLLVKRTPLPFTNNRSNDYIATCSSSAESIKRAGSPLGAYADIKRERLSGDSNASSDEELEHSNNNNNSDLAYNKNKSSSSNNNNGNGRSSRMTSRDSETDVSSLKSEQSLSHHNKMMDLNGGGSSSLIKCETEAPSPQGSTSILQEKLAQIKAEQEQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00915255;
- 90% Identity
- -
- 80% Identity
- -