Lclr009953.1
Basic Information
- Insect
- Lordiphosa clarofinis
- Gene Symbol
- -
- Assembly
- GCA_018904275.1
- Location
- JAEIGQ010000004.1:683886-685625[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.8 7.7e+03 -2.8 0.0 27 45 55 73 53 75 0.77 2 10 0.1 1e+03 0.1 0.0 21 44 148 171 144 175 0.88 3 10 8.2e-05 0.78 10.0 0.4 21 52 176 207 166 209 0.87 4 10 0.12 1.1e+03 -0.1 0.0 21 44 232 255 224 259 0.88 5 10 0.0052 50 4.2 0.0 21 46 260 285 256 292 0.87 6 10 0.00012 1.1 9.5 0.3 21 52 344 375 334 376 0.87 7 10 0.00022 2.1 8.6 0.3 21 52 400 431 392 433 0.87 8 10 0.12 1.2e+03 -0.2 0.1 21 47 456 482 446 489 0.77 9 10 3e-07 0.0029 17.8 0.1 21 54 512 545 496 545 0.87 10 10 0.0051 49 4.2 0.1 23 45 542 564 539 571 0.87
Sequence Information
- Coding Sequence
- ATGCATAGCAAAGCCAAGCTATGCCGGGCTTGTGAGTCCACTTCGGACGCTGATGTGGACACCAACTGGCAGAATATACTCACCAACAGCGACTTGAAGATTATATTAGAGGAGGTAACTGGTCGGATTTTCCAACCTACAGAGGATGTACCTGAATGGATATGCCCTCCATGCCTGGCAGCTGCAAAAATTGCTTTGCAATTTAAGCGTCGATTTGAGAAGAGTCTGCAGTATCTAAACAAGCAGATGGAGCAGAATGAACCCACATCCAGCAAGGACGGACCGCAGTTCGAGCAAGAGGAGACCTTTGATAGCGATAGCATAAGCGAAGAGACCGAATCGGAAGACAAGAGTTACACTACCGACATTCTAAGCGAAGAAGAGACCCTCACAAAAACTGGAAAAGGACCCCACGAATGCTGCAAGGAAAATCTGTTAAAGGGCGAGAAACCCTTCGCATGTTCCAACTGCTCAAAGACTTTTAACAAAAAGAGCGGACTGAAGAGACACAATCGCATGCATACTCGCGAACGGCCTTACAAGTGTACAGAGTGCTCGAAGTCCTTTACCCAAAGTCGCTCTCTAAAGGCACATCTTCGCTTGCATACTGGTGAAAAACCCTTCAAATGTTCCAAGTGCTTAAAGACTTTTACCAGCAAGAACGAACTGAAGATACACAATCGCATGCATACTGGCGAAAAACCTTTCAAGTGCACAGAGTGCTCAACATCTTATAACCAAAAGGGCGCTCTAAAGAGTCATCTGCTTACGCATACTGGCGAACGGCCTTACAAGTGTACAGAGTGCTCGAAGTCCTTTACCCAAAGTGGAGCTCTAAAAAAACATCTTCGCTCGCATACTGGTGAAAAACCCTTCGAATGTTCCCACTGCTCAAGGACCTTTGGAACTAAGGACATTCTGAAGAATCACAATCGCACGCATACGGGCGAGAAACCCTTCGCATGTTCCAACTGCTCAAAGACTTTTAACAGAAAGGACGAACTGAAGATACACAATCGCACGCATACTGGCGAACGGCCTTACAAGTGTACAGAGTGCCCGAAGTCCTTTACCCAAAGTCGCTCTCTAAAGGCACATCTTCGCTTGCATACTGGTGAAAAACCCTTCAAATGTTCCAACTGCTCGAAGACTTTTAACAGAAAGGACGAACTGAAGATACACAATCGCGCGCATACTGGCGAACGGCCTTACAAGTGCACAGAGTGCCCGAAGTCCTTTACCCAAAGTCGCTCTCTAAAGGCACATCTTTGCTTGCATACTGGTGAAAAACCCTTCAAATGTTCCAAGTGCTTAAAGACTTTTACCAGCAAGAACGAACTGAACAGACACAATCGCATGCATACTGGCGAACGGCCTTACAAGTGTACCGAGTGCCAAACGTCTTTTATCCTAAGAAGCTCTCTAAGAAATCATCTTCTCATTCATACGGGCGAGAAACCCTTTAAATGTTCACACTGCTCGAAGGCATTTAAAACTAAGTCCAGTCTGAAGGAACACCATCGCACCCATACTGGCGAAAGGCCGTTCCAGTGTCCAGAGTGTTCAATGTCTTTTGCCCAAAGTGGGAATCTAAAACGCCATCTTCTTACGCATAATGGGGCGAAACCCTACGTATGTTCCTTCTGCTCAAAGACGGTTAGGAATAAGTCTGAACTGAAGAGACACAATCGCATGCATACTGGCGAACGGCCTTTCAAGTGTACCGAAGTAGCTCTCTAA
- Protein Sequence
- MHSKAKLCRACESTSDADVDTNWQNILTNSDLKIILEEVTGRIFQPTEDVPEWICPPCLAAAKIALQFKRRFEKSLQYLNKQMEQNEPTSSKDGPQFEQEETFDSDSISEETESEDKSYTTDILSEEETLTKTGKGPHECCKENLLKGEKPFACSNCSKTFNKKSGLKRHNRMHTRERPYKCTECSKSFTQSRSLKAHLRLHTGEKPFKCSKCLKTFTSKNELKIHNRMHTGEKPFKCTECSTSYNQKGALKSHLLTHTGERPYKCTECSKSFTQSGALKKHLRSHTGEKPFECSHCSRTFGTKDILKNHNRTHTGEKPFACSNCSKTFNRKDELKIHNRTHTGERPYKCTECPKSFTQSRSLKAHLRLHTGEKPFKCSNCSKTFNRKDELKIHNRAHTGERPYKCTECPKSFTQSRSLKAHLCLHTGEKPFKCSKCLKTFTSKNELNRHNRMHTGERPYKCTECQTSFILRSSLRNHLLIHTGEKPFKCSHCSKAFKTKSSLKEHHRTHTGERPFQCPECSMSFAQSGNLKRHLLTHNGAKPYVCSFCSKTVRNKSELKRHNRMHTGERPFKCTEVAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00915490;
- 90% Identity
- iTF_00915490;
- 80% Identity
- iTF_00915490;