Lclr017893.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa clarofinis
Gene Symbol
-
Assembly
GCA_018904275.1
Location
JAEIGQ010000144.1:352732-357263[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0036 0.19 12.4 1.1 1 23 196 218 196 218 0.96
2 25 0.04 2.1 9.1 2.9 1 23 224 246 224 246 0.95
3 25 0.07 3.5 8.3 0.8 2 23 278 299 277 299 0.94
4 25 0.58 30 5.5 4.1 1 23 371 394 371 394 0.91
5 25 1 53 4.7 5.1 2 23 400 423 399 423 0.92
6 25 0.027 1.4 9.7 1.3 3 23 462 482 460 482 0.96
7 25 0.029 1.5 9.6 0.7 1 23 556 579 556 579 0.96
8 25 0.033 1.7 9.4 0.6 1 22 588 609 588 609 0.95
9 25 0.026 1.3 9.7 3.8 1 23 618 640 618 641 0.96
10 25 0.0028 0.14 12.7 0.3 2 23 672 693 671 693 0.97
11 25 5.4e-06 0.00027 21.3 4.2 1 23 701 723 701 723 0.99
12 25 0.2 10 6.9 5.9 1 23 863 886 863 886 0.96
13 25 0.056 2.9 8.6 0.3 2 21 895 914 894 915 0.92
14 25 0.022 1.1 9.9 1.5 1 23 924 947 924 947 0.96
15 25 2.4e-05 0.0012 19.2 1.6 2 23 960 981 959 981 0.96
16 25 0.00033 0.017 15.7 1.1 1 23 988 1010 988 1010 0.98
17 25 0.97 49 4.8 0.4 3 23 1038 1059 1037 1059 0.96
18 25 0.016 0.79 10.4 4.7 1 23 1107 1130 1107 1130 0.96
19 25 0.021 1.1 10.0 1.3 1 23 1167 1190 1167 1190 0.98
20 25 0.00033 0.017 15.7 2.0 1 23 1219 1242 1219 1242 0.98
21 25 8e-06 0.00041 20.7 0.2 2 23 1272 1293 1271 1293 0.95
22 25 0.00033 0.017 15.7 3.1 1 23 1299 1321 1299 1321 0.99
23 25 6.1e-06 0.00031 21.1 3.9 1 23 1327 1349 1327 1349 0.98
24 25 2.8e-07 1.4e-05 25.3 2.4 1 23 1355 1377 1355 1377 0.99
25 25 0.0027 0.14 12.8 0.2 1 21 1383 1403 1383 1407 0.91

Sequence Information

Coding Sequence
ATGCTGCCCACGGATATTTGCCGTACGTGTGGACAGCAAAATACAAATTTACTGCCGCTCTCCAGCTGCTTGGAAAAGCTACAGGAGTTGACACAAATTCCACTGCAGGAGGAGAGCGATAATGATAATTTGCCTCAACAAGTGTGTGGCGATTGTTTGAATAGATTGGAGAATGCCTATGCATTTGTGGAGCAGGCCAAAAGAGTAAATGGCGAGCTAATGGTAAGGCTAAGGCAATGCCTGGATGAGGCACCTATTGACTTGCCCCTGGACCAAATCAAAATGGAAATGGAAGAGGATGCGACTGTGGAAGAAAAGGCTGCCATAAAATGCCAGCTGGAGGCGTCCAGTGAGGAGAGTGCGGCAGAGGCAGGCGATTTAAATTGGACTGACGAAAATGAGGCAGATGCTAAACCCTATCAGCTAAGACGCAGTCTACGCAAGATAAAGCCACCGCTGGACAGCGATGAGGAGCAGGAGCGGCACAGCCGAAACCACGAGGAGCAGCTGGCTTTGCCACCCAAGCGTGGTCGTGGACGTCCTCCTCGACTGGCCAAAAGCCTAACCCTTAATTCCGACGGTCGTCACGCCTGTCAAGTGTGTGGCAAGTCATTCTCTTGGTTTAGAGATATGCAGCGACATGCCCGCATCCATTTTGAGGTGGCCTCCCATGTCTGTCCCACCTGTGGCAAGAGTTTTCTGCGCAAGGATAAATATCTGTTCCATTTAAGAAGCCATGAGCGACGCCAAGCCAAGTGTCAGTCATTGACACAAAGCAAGGAATGGAGATTTGCGGAGCGTTTGTATAGCGCAGGAAGACTCAAATGTTTGGAGTGCAAATTGTGTGGTTTAAACTGTTCAAAAATTCAGGAATTGAGAACCCATTTGGAGGGTCATGCTCAGGCGGAAACCCTGGCCCAACTCTCGCTAGAACAGGAGGTAATCAAGGAACTATACCACAATTATTCAATAGAACAATTGCCTGAAATTAAGGAACAAATCTGTAAAGAGCTAACCCAAGGACATTTGCAGCAGTTTTGTTCTGTGGTCAATTCCTTTGGCTACGAGTTGTCTTTAAGTGATTCGGATGACGAATTGGCTGAACCCAAGTATGAATGTATAAACTGTCACTTAAACTTCAATCGCAAACATCGTCTCATGCGCCATACCCTAGAGGAACACCCGCAGACTGAGTTAAGCTGTAATCATTGCCAGATTGGATTTGTCTGTCCTAAGCTCCTTGAACAACATCAGCGTACCCAATGTCATTCCAAAATGAAACGTTATCGTTGCCGAAGTTGCCCGGGGAAATTCATGTGGCTGGAGAACCTAGAACGGCATAGCTGTGCTCAGTCAGGCAGCAAGGAGTTCAAGCAAATCCACTGCTGTCTGTGCGATGTTCAATTCCCGAGTCTTATTCAACTGAGAGAACATATACTAACGCATCGGGATGGATGCACTGGCATTGATCCTCAACATAATTCTACCTTCTTTCGTTGCTATTATCCCAAGGGCTTGGCTTGTACTAAGGCTGAGTTAGCAGCACGCATAGCGGGTGACTTTGAGGCCCAGGACTATGGTCGCTATTACAATGCCTGCTCTGGCAGTGGCCAGGAAATTGACCTTTTTGACTCGGATTCGGATGACAGCGAGAAGAAGATCCAACACATTTGCTCCTTGTGTGGAGAGATAACCAACAGATTGCTTAAACTTTTGCAGCATCAGCGGTCGGTTCACTCTCAGGAGGACGTTCCATTGCCCTACACTTGTGAGGATTGTAGCAGGGGGTTTGTGTCGGATTTGCTGCTGCATCAGCACAGACGTCGGAATTGTAACAAAAGACATGCGAAATATCAATGCCAGCTGTGCCAGCAGCATTTCGTGTGGCAGGTGAACTATGAGCAGCATCAAAGAGTGCACCATCAGGAGCAGCAGCAGACCGGGCAGGAGCCAAAGCCTGAGCCAGAAGAGGGTGAGCCGACTAACACACAGAAAAACTCCTCCAACAAACTGCAGTGCGATGAGTGTGAAAAGGTCTTTATCTGGGTCAAGGATCTTAATCGTCACAAGCGCATGCATCTGCCCCAGACGGCAGCCCAGTACGAGTGCCCGCACTGTGATCGCAAATTCCATCGCAAAGATGGACTCAAATCCCACCTAAGGATACATAGCGATCAACAGCTAGAGTTCGAGAAGAATGAAGAATTCCCCACGGCAGCTCAGCCTTCCGTGGCACTAACTCAACTGGGCCGTCCACATGGTTGCAAGCAAATCCAATGCATGATCTGTCTGTCGCAGCACTCCAAAATAAGGGATCTGCGTAGTCATCTCACTTCTCATCAGTTTGGAGTAAACTTGCCACCCGAAAAAGAAGCCACCAGCATCAGTCGCTCTTTATATGCCGAACTGAGTGCTCCTTTGGCCAGAGATCAACTCATTGAGCGAATCAAAGTTGATGTGGCCAAGGGTTTGGAGCTTGACAGATTTATATCCATTACCAATGAGGCGGGTATGGAGCTTAGCTTGGAGAGCAGCGAAACCGATACGGATTCCGAGGAGGAGACCAAAGCTGATCAACAGGAAGCATATGAGTGCAATCTCTGCCATTTGAAGATGAAACGAAAATATCAATTGTATCACCATCAGATGGAGCAACATGGCTGGCCGGAAGAGGGTTCCAGTGTTTGTCCACACTGTCAGGCCCGGTTTGTGAGTGATCTGCTGCTGGAGCATCATCTGAGGAGCTTGTGCCGGAATACACACAAGCGCTTCCAGTGCCGCAAGTGTCCCCTACGCTTCCGCTGGCGGGAGAATCTCAAATTGCACACGAATCTCTCACATCAGCCCCGGGAAACGGGCGAGGAGGCAGCCGAGTTGAGTTGCCAACAGTGTAATCGTAGCTTTAAAATGCAAAAGGATCTCACTCGTCACATACTCATGCATGGCCAGGATTCGAGTATCTACCGTTGTCGCTGGTGTGCACGTCGTTTCTACCGCAGAGCCAATCTGCTGCAGCATATCGAACGTCATGGCATTGCGAAAAATCAACTGCCCTATGCCGAGGCCTTGCTGAATGCCTATGGCCAGGCCAATGGACCGAAAGTGATCCTCTGCAAGGTGTGTGAGATGAGCTGTGGCAGCATACAAGCTCTGCGCGTCCATTTGGCCAGTAATCATCAGTTGACCCTTGAATTGGTCACCCAGCAGAATTATTCCATTACCAATCAAGCGGGCTATGAACTGCACCTGGAGGACTCGGAAACGGATGAGGCAGAGGGGGTTGTAGAAGTTCTTAAAGCGGAGGGTTCACCCGCCAGCTACACCTGCAGCATGTGCCAATTAAGGTGTGTGCGGAAATATGAACTCCATCAGCATCAGCAGGCCATGCATCGTGTGGAAAAGGTTCCTCAGGGTTGTGATCAGTGCATTTTTAAGAGCGTTTCCGCGGATCTCATTGCCCATCATAAGCGGGTGCAGTGTGGCAATCAGGAGAAGCAATTCAAATGCGTCAAGTGCTCCTACAAATTCATGTGGGAATCCAATCTGTTGCTACACATGCAAACGCAGCATGGCAAAAGCGAGGAGGAGGAACAGCCACCTCCAGCGCAAACAGCTACCAGCCAGGAAGATGCCAAAATAGAATCGCAGCAAATATTCCAATGCGCCCAGTGTCCGCGCAAATACAATCGCAAGGATCGCCTCACAGCACATCTGAAGAAATTCCATAATCCTGCCCTGGTCAACAACGTTTTACAGTCTCCCCTAGTTACTGTTCCCACTTCTGCCTCGCCAGCCAAACAGCCCAAACGTTTTCTTTGTGCTTTCTGTGGCAAAGCCGTCAGCTCATCCTCAAATCTCATTATACACATGCGACGCCATACCGGAGAGAAGCCATTCAAGTGTGATTTCTGTGACATGGCCTTCCCACGATCCTCGGATCTGCAGTGTCATCGTCGCACCCACACCGGCGAACGTCCGCATGTGTGCACCGTCTGCCACAAGGGTTTCGCGCGTTCCTACAAACTGCAGCAACATATGCGCATCCACAATGGCGAACGACCCTACAAGTGTACGTACTGCGAGAAGAGTTTTACCCAATCCAATGATTTGACCTTACACATACGAAGACACACGGGCGAGCGTCCATATCAGTGTGGGACTTGTGGCGAGCGCTTTATTCAGGGCACTGCATTAAAGAATCACCGCCTGCAGCAGGGTCACTATGAGGAGGGTAGCCTGGGTGCCGGAGACCCGCCACCGAGACGCACAGTTCTTGAGCAGTTTAAAGGGGAGTGA
Protein Sequence
MLPTDICRTCGQQNTNLLPLSSCLEKLQELTQIPLQEESDNDNLPQQVCGDCLNRLENAYAFVEQAKRVNGELMVRLRQCLDEAPIDLPLDQIKMEMEEDATVEEKAAIKCQLEASSEESAAEAGDLNWTDENEADAKPYQLRRSLRKIKPPLDSDEEQERHSRNHEEQLALPPKRGRGRPPRLAKSLTLNSDGRHACQVCGKSFSWFRDMQRHARIHFEVASHVCPTCGKSFLRKDKYLFHLRSHERRQAKCQSLTQSKEWRFAERLYSAGRLKCLECKLCGLNCSKIQELRTHLEGHAQAETLAQLSLEQEVIKELYHNYSIEQLPEIKEQICKELTQGHLQQFCSVVNSFGYELSLSDSDDELAEPKYECINCHLNFNRKHRLMRHTLEEHPQTELSCNHCQIGFVCPKLLEQHQRTQCHSKMKRYRCRSCPGKFMWLENLERHSCAQSGSKEFKQIHCCLCDVQFPSLIQLREHILTHRDGCTGIDPQHNSTFFRCYYPKGLACTKAELAARIAGDFEAQDYGRYYNACSGSGQEIDLFDSDSDDSEKKIQHICSLCGEITNRLLKLLQHQRSVHSQEDVPLPYTCEDCSRGFVSDLLLHQHRRRNCNKRHAKYQCQLCQQHFVWQVNYEQHQRVHHQEQQQTGQEPKPEPEEGEPTNTQKNSSNKLQCDECEKVFIWVKDLNRHKRMHLPQTAAQYECPHCDRKFHRKDGLKSHLRIHSDQQLEFEKNEEFPTAAQPSVALTQLGRPHGCKQIQCMICLSQHSKIRDLRSHLTSHQFGVNLPPEKEATSISRSLYAELSAPLARDQLIERIKVDVAKGLELDRFISITNEAGMELSLESSETDTDSEEETKADQQEAYECNLCHLKMKRKYQLYHHQMEQHGWPEEGSSVCPHCQARFVSDLLLEHHLRSLCRNTHKRFQCRKCPLRFRWRENLKLHTNLSHQPRETGEEAAELSCQQCNRSFKMQKDLTRHILMHGQDSSIYRCRWCARRFYRRANLLQHIERHGIAKNQLPYAEALLNAYGQANGPKVILCKVCEMSCGSIQALRVHLASNHQLTLELVTQQNYSITNQAGYELHLEDSETDEAEGVVEVLKAEGSPASYTCSMCQLRCVRKYELHQHQQAMHRVEKVPQGCDQCIFKSVSADLIAHHKRVQCGNQEKQFKCVKCSYKFMWESNLLLHMQTQHGKSEEEEQPPPAQTATSQEDAKIESQQIFQCAQCPRKYNRKDRLTAHLKKFHNPALVNNVLQSPLVTVPTSASPAKQPKRFLCAFCGKAVSSSSNLIIHMRRHTGEKPFKCDFCDMAFPRSSDLQCHRRTHTGERPHVCTVCHKGFARSYKLQQHMRIHNGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYQCGTCGERFIQGTALKNHRLQQGHYEEGSLGAGDPPPRRTVLEQFKGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00919976;
90% Identity
iTF_00919976;
80% Identity
-