Lclr007057.1
Basic Information
- Insect
- Lordiphosa clarofinis
- Gene Symbol
- Hr39_1
- Assembly
- GCA_018904275.1
- Location
- JAEIGQ010000082.1:90980-96952[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 1e+04 -4.4 1.5 122 163 4 43 2 59 0.48 2 4 0.18 1.8e+03 -1.9 1.5 77 117 235 277 179 353 0.59 3 4 0.00059 5.6 6.3 0.7 1 14 428 441 428 445 0.87 4 4 2.3e-83 2.2e-79 267.9 9.0 86 408 456 737 443 737 0.90
Sequence Information
- Coding Sequence
- ATGTCTAGCATTAAGACAGAGCAACTGAGTGCCCCAACATCCAGTTCCAGTGGTAGCTATCAGCTACCCATGAATATGTCCACTGCAGCTGCAGCAGCAGCGTCAACAGCCACAACAACCACAATACGTCACAATGTCTCCGTTACGAATATCAAATGTGAGCTGGACGAACTGCCCACACCCAATGGCAATGTGGTGCCAGTTATAGCTAACTATAATCATGGCAGTCTACGAATACCCCTGAGTGGAAAGTCAAACACTGACGCCGATTCGGATTCAGAGACAGAGCTAACAAATATAGAGAACCTGAAGGTACGACGACGTGGTACAGATAAAAATGGGCCGCGACCCATGTCCTGGGAGGGAGAACTGAGTGAAGCGGAAACCAATACCCTAGAGGAAGAGGAGCTTATGGACACGGATGGCATGGGCACGATGGTGATCAAGAGCGAGGCTGGTAGTGGTGTACCCACAATATGTCCCATCAAAACGGAGCTGGAAAACATTGCAGAAGAGCTGAAGCCACAGTGCTGTAAGCCCACGGGCTATCCGCTATCTAAACTAAAATTGGCTCCCACGCAGAGTGATCCCATAAATCTCAAGTACGAACCAAGTTTGGGTGATAATTCTCCTTTAATACACTCGCGTACCAAGTCGAATAGTGGAGGACATTTACCGCTGCCCGCCAATCCCAGTCCCGATTCGGCCATACATTCCGTTTATACGCATAGTTCGCCCTCCCAATCGCCATTGACCTCCCGACATGCCCCATACACGCCCTCGTTAAGTCGAAACAATAGCGATGCTTCGCACAGCAGCTGTTATAGCTACAGCTCTGAGTTTAGTCCCACACACTCACCCATTCAGGGGCGTCACAATCCCATTTATGCAGGTGGAGGAGGAGGAGGACCTACTCAGTATGTTCAGCACAGTGTTTTGTACAGGCCACTGAATGTAGAGGCAGCTGAGGCTCAAAATTTGTCTATGGATTCGACCAGCCTGGATCACTCCGGTTCTTCCAATTTACCCGCCTCACCAGCTGGCATCTCCCGACAGCAATTGATTAACTCTCCCTGCCCCATTTGCGGCGATAAGATCAGTGGCTTTCACTACGGCATCTTTTCCTGCGAATCGTGCAAGGGCTTCTTCAAACGCACCGTCCAGAATCGCAAGAATTATGTATGTGTCCGTGGTGGTCCCTGTCAAGTGAGCATTTCCACACGTAAAAAGTGCCCCGCCTGCCGTTTTGAGAAATGCCTGCAAAAGGGCATGAAGCTGGAGGCCATACGGGAAGATCGCACTCGGGGAGGTCGCCCCAGTTTGGGGAACAGTGGTAGTGGAGCCAACATTAAAACAGAGTACACGGAGGCAACCGCAAATCATGCAACGCGAACTACTAGCATTCCAGCACTATTGCAGGAAATCATGGATGTTGAACATCTATGGCAATACACAGATGCCGAATTGGCACGCATTAATCAGCCATTGTCCAGTTCCTCGTCCACATCAGCCTCATCAACGACTGCTGTTCAAGGTCAATCATCTAACACTGCCAATAATGCCCAACAAATGACCAATCCACTGCTGGCCAGTGCTGGTCTCTCATCCAATGGGGAGAATGCCAATCCCGATCTAATTGCTCATCTTTGTAATGTGGCCGATCATCGTCTCTATAAGATTGTCAAGTGGTGCAAAAGTCTGCCGCTTTTCAAGAATATTTCGATCGACGATCAAATATGCTTGCTCATCAATTCGTGGTGTGAGCTGTTGCTATTCTCCTGCTGTTTTCGTTCCATTGATACACCCGGTGAGATTAAGATGTCACAAGGTAGAAAGATTACGCTGGCGCAGGCCAAAACAAATGGATTACAGGCCTGCATTGAACGCATGCTCAATCTGACAGATCATTTGAGACGTTTACGCGTGGATCGCTATGAATATGTTGCCATGAAGGTGATCGTGCTGCTGCAGTCGGATACCTCCGAGCTGCATGAGGCGGTCAAAGTGCGCGAATGCCAGGAGAAGGCATTGCAAAGCTTACAGGCTTATACTCTGGCCCATTATCCTGATACGCCGTCCAAATTTGGTGAGCTGCTGTTGCGTATACCCGATCTGCAGAGAACGTGTCAGCTGGGCAAGGAAATGCTGACGATTAAGACGCGAGATGGTGCCGATTTTAATTTATTGATGGAACTGTTACGCGGAGAACATTGA
- Protein Sequence
- MSSIKTEQLSAPTSSSSGSYQLPMNMSTAAAAAASTATTTTIRHNVSVTNIKCELDELPTPNGNVVPVIANYNHGSLRIPLSGKSNTDADSDSETELTNIENLKVRRRGTDKNGPRPMSWEGELSEAETNTLEEEELMDTDGMGTMVIKSEAGSGVPTICPIKTELENIAEELKPQCCKPTGYPLSKLKLAPTQSDPINLKYEPSLGDNSPLIHSRTKSNSGGHLPLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQGRHNPIYAGGGGGGPTQYVQHSVLYRPLNVEAAEAQNLSMDSTSLDHSGSSNLPASPAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCQVSISTRKKCPACRFEKCLQKGMKLEAIREDRTRGGRPSLGNSGSGANIKTEYTEATANHATRTTSIPALLQEIMDVEHLWQYTDAELARINQPLSSSSSTSASSTTAVQGQSSNTANNAQQMTNPLLASAGLSSNGENANPDLIAHLCNVADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSIDTPGEIKMSQGRKITLAQAKTNGLQACIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTSELHEAVKVRECQEKALQSLQAYTLAHYPDTPSKFGELLLRIPDLQRTCQLGKEMLTIKTRDGADFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00914558;
- 90% Identity
- iTF_00919862;
- 80% Identity
- iTF_00915385;