Basic Information

Gene Symbol
ct
Assembly
GCA_035044965.1
Location
JAWNNM010002472.1:926909-976313[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 6.4e-27 6.9e-23 80.7 0.0 3 72 1033 1103 1031 1108 0.95
2 3 6.3e-32 6.8e-28 96.8 0.0 3 77 1506 1581 1504 1583 0.96
3 3 3.9e-31 4.2e-27 94.2 0.0 3 76 1768 1842 1766 1845 0.96

Sequence Information

Coding Sequence
ATGTCAAAAGCCAGCCAACAACCCAACCCCCTGCCCCAACCCTCCACAAATTCCGAATATGAAAAGCTTGCGcGCGCTACCCTTGCCGAGAAGGAGGTAAACACACTCAAGGAGCAACTATCCACTAATTCACCCGGCAGCAACAACGACACcagcaacgacaacaacacggcagcaacagcagcaacagcagcagcaacagcagcagcagccagcttGGCCAACGACGAGGATAACGATAGTGACAAACTGCTAAATAGCTCAATTGTTGCGGCGGCCATAACGCTGCAACAGAACGGCGGCAATCTGCTGGCCAATACCAATACACCATCGCCATCGCCACCGTTGCTGAGCgccgagcagcagcaacagttgcaGAGCAGCTTACAGAACGGTGGTGCGGTGGTTGGCGGTGCTTGTCTCAATCCCAAGCTCTTTTTCAATCACGCCCAACAAATGATGATGgaagcggcagcggcagcagccgcagcagcagcagcagcagcggcagcagcagctgtacaacagcaacaatcgCCACTCCGTTCGCCGTCAGCTGATGTGAGTAGTTTGGTGGCAGCTGGCGGTGGTGGGGGTGTACAGAGTATAGAGCAAACGCCTGAGCGGGCAAGGGCAGATGTGGCccacagcaacaataacagcagcagcaacaaacagCAGGcggacgatgatgatgaggaggaggaagaggaagaggaagaggaggaggaagaagaagaggaagaTGAGGTGgatgaggaggaagaggaagaCAATTCCTCGCTGCAATCGAATGCAGATGAATtggaacagcaacagcaacagcaacaggagGCAAGAACTGatacagcagcaacagttgcaAATACAGTGAATGCAGCTGATGAGGAGGACATGGATGAGGATGATATACAAGAGGCGGAAGCTAGTTTAAATGTTAGCAATAATCACAATAACGATAGCAATAATAGTTGTAGTCGAaagaacaacagcagcaacaacaacagcagcagcaacagtggCAACAATGTGGCACAGCGTGATAATAATGATAATGAGCCACATGTGGTGGATGACTTGGACTGCACCAACAACAATActaacaccaacaacaacaacaacaacaacaacaagagcagcagcaacgagAAGCGCAAGaagcgcaacaacaacaacaatcagcCTGCTGTTTTATTAGCTGCCAAAGACAAAGAGATTAAAGCACTTTTGGATGAATTGCAGCGCCTGCGTGCCCTGGAACAAACTCATCTGGTACAAATTCAACGACTTGAGGAACATCTGGAGGTGAAGCGACAGCATATCATGCGACTGGAGGCCCGTCTCGATAAGCAGCAGATCAATGAGGCACTGGCCGAGGCCACCGCCTTGGCAGCTGCCACaattacaaataataataataacaataacaacaataacaatagtAATAATAGTGGACAGAACAAGGATCAGAGTAACAGCAGTGCAAATGAACAAACAGTTGCCGTTGTACAACAGGAgccgacagcagcagcagcagcagcaacaacagcaacagcagcagcagcagcagcagcagcagtagccaTGCTGGTGGATGccgatgatgacgacgacgacgaggaggagcaacagcagcagcaacaacaacaacaacaacaacagcaggaaTTGGCTACTGATCGTACCGCTGAacaggatgaggatgaggaagATGATAACGATGAACAGGATGTGGTAATGTCCTCCAACACCAATAACCATCCAAACGAGGGCAATgagttgaaaatcaaaaaggaaCAGCAcaGTCCCCTCGATCTGAACGTGCTGAGTCCACAATCGGCCATTgccgctgcagctgcagccgccgctgctgccgcctgtGCCAATGATCCCAACAAATTTCAGGCACTTTTATTGGAACGCACCAAAGCTTTGGCCGCGGAGGCTTTGAAGAATGGCGCCGTTGCCGCTGCAGCCGCTGCAGCCAGCGAGGAAAAGACGCTCGATGCTGCAGAGGGAGCAACCAAGAATGAAACGGCCGAGAAAGTTGCCAGTgctgagcagcagcagcagcaacagcagcagcagcagcaacagcagcagcagcaacagccgccgCATGCAACACTCGAAGAGCAGCTGGTCAACAGCTATTGGAGACGGGGCTTTGAGGGGAATGGCAGCAGCAAAACGCCaacaatttatcaaaattcgcTGCCGCctccgctgccgccgccacccacagtagcagcagctgcagcagcagccactcTTACCACCcctcagcaacagcaacaacaacagcaacaacaacagcaacaacctcAACATGGACCCTCGTCCACCGCTTTGCTCAGTCAATTGGTTAACTCAACTTTCTCCCACCCTTCTCGCCTAGATGCCGGCAACAGccatcaccagcagcagcaacatcagctCCACCATTcgcacaacagcagcaacaacagcagcgccagcagcagcagcaacaacagcagcagcaacagccaccaGAACCAGAGCAATTGTCCCTCCGGCACACCTCAAcccagtggcagcagcagcggcgacaTCCTCAACCATGTTGGCCATCATCCCGTTGGCCATCATCATTCCCATCACGGCCACAGCCAATTGTTGCACCAGGCCgcggccgccgccgccgctgcccaTCAGTTCGATTCCAATTCATCAACCAGCTCGACCAGCACACCGAACAGCACCGCCCAGTTGGCCGCCAGCATAGCCAATAGTAGCAAATCCCTGCTCCAGgcagccgccgctgccgccgccgaggacaacaacaacagtttgACACCGAACGCAAACGcggccgctgccgccgccgccatgGCCGCCCATGCCCAGCATGCCGCCGCCCTGGGTGCACCCAGTTTCTTGCCGTTCCAATTTGCCGCTGCCGCAGCGGCTGGACAGGATGCGCGTGCACATTATCGTTTCGCGGATGCGGAACTGCAGCTGCCACCGGGCGCCTCAATGGCTGGCCGGCTGGGTGAGTCGTTGATACCGAAGGGTGATCCCATGGAGGCCAAGCTGCAGGAGATGCTGCGCTACAATATGGACAAGTATGCCAATCAGGCACTGGACACGCTGCACATATCGCGGCGGGTGCGCGAATTGCTGTCGGTGCACAACATTGGTCAGCGTCTGTTTGCCAAATACATTTTGGGCCTGTCGCAGGGCACCGTGTCGGAGCTGTTGAGTAAACCGAAGCCCTGGGATAAGCTAACGGAGAAGGGACGGGACAGTTATCGCAAGATGCATGCCTGGGCGTGTGATGATAATGCGGTGATGCTGCTCAAATCGCTAATACCCAAGAAAGATTCTGGTCTGCCTCAATATGCGGGACGTGGAGCTGGCGGCAGTGGCGGTGATGATTCCATGACCGAGGATCGCATTGTCCACATCCTAAGTGAGGCCTCCTCGTTGATTAAGAATAATGTGGCAGCtgtccagcagcagcagcaacaacagcaccaGCATCAGGATACGCACAGCAATGAGGATAGCAAATCACCACCACAGAGTTGCAGTTCACCGTTCTTCAAGGTGGAGCAACAATTGAAGCAACAGCATCACAGTGCCGAGCATAGGGATCAGCGTGATGCTGTGGTGGCGGctgcacagcagcaacaacagcgagAACAACGCGAGCAGCGAGAACAACGGGAGGCGGCTCagcgggagcagcagcaacgttTGCGGCAAGAGGATTTGGCACAAGATAAGATGGCACGTTGGTATCAGGAGCTAATGGCAAGGCCTCGTGAGGCAGCATTTCCCAGCTTTTTGTTATCGCCTTTCTTTGGTGGTGCCGCCGGTATGCCCGGTGCTGGCAATGCCTTTCCCGGTGCAAATGCATTCCCCGCGGCCATGGCCGCCGATGAGAACATACGCCATGCTTTCGAGCGTGAGATAGCCAAActccagcagcaacatcagcaacaacaacagcagcagcagcaccagcaacaaGCCGTTGCCGGTTTCCCCCTCTCCAGTCTGATGGCCTTGCAGCAGCAAGTGTTAAATGGTGCTCAGGACTTATCGCTGGCCGGCAAGGATATCAAATTGAATGGACAACGTGCCTCGTTGGATCACAGTAGCAGCAGCTCCAAagatggcgaccgtgacgaTAGTTTCCCCTCATTGCATGGCCGTAAATCGGaaggcggtggtggtggtggcaacACACCCGCTCCGCCCGCACCTCCGGTGCTAACAAACGCTTCCAGCGGCGCCAGTGGTAATGCCCCAGCTCCAGCTGGTGCCAGCAACTCGGCCGCGCCCAGCCCCTTGAGTAATTCCATTCTCCCACCTGCTCTAAGCAGTCAGGGTGAGGAGTTTGCGGCCACCGCCAGTCCCTTGCAGCGTATGGCTTCCATTACCAACTCACTGATCACTCAACCCCCGGTCACGCCGCATCACAGTCAACCCCAAAGACCCACCAAGGCGGTACTGCCGCCGATTACCCAGCAACAGTTCGACATGTTCAACAATCTCAACACGGAGGACATTGTGCGTCGGGTGAAGGAGGCTCTGTCGCAGTACAGCATCTCGCAGCGCCTGTTTGGCGAGTCGGTTCTGGGCCTGTCGCAGGGTTCCGTGTCCGATTTGCTGGCCCGACCCAAGCCCTGGCATATGTTGACCCAGAAGGGACGCGAACCCTTCATCCGCATGAAGATGTTTCTGGAGGATGAGAATGCGGTACACAAGCTGGTGGCCAGCCAGTATAAGATAGCGCCCGAGAAGCTAATGCGCACGGGCAGCTACAGCGGGAGTCCACAGATTAGTCAGGGACTGGCCAGTAAAATGCAGGCAGCCTCGCTGCCCATGCAGAAGATGATGAACGAACTGAAGCTACAGGAGCCGGCCCAGGCTCAGCATATAATGCAGCAGATGCAGGCGGCGGCCATGTCGGCGGCCATGCAACAGcaggtgcagcagcagcaggcgcagcaggcacagcagcaacagcatcagtcgcaccaacagcaacagcaccaGCAGGCAGCCCAGGCGGCTGCggcagccgccgccgcacTGCATCATCAGAACATGCTGCTCACCTCGCCCGGTCTACCACCCCAGCATGCCATCAGTTTGCCAGCCAATCCGGAACAGGTGCGTGCCAATGCCAATGCCTCCGGCAGCGTTTCCTCTGGCGAGGAGAAGAAGCCCATGCTGATGCCTGTGCATAGCGGAGCACATCCTGCCAATGCCATGCGCAGCCTGCACCAGCACATGTCTCCCACCGTCTATGAAATGGCCGCCCTCACCCAGGACCTGGACACACACGACATCACCACCAAAATCAAGGAGGCTCTGCTGGCCAACAACATTGGCCAAAAGATTTTCGGTGAGGCCGTGCTGGGTCTCTCCCAGGGCTCCGTCTCCGAGCTGCTCAGCAAGCCCAAGCCCTGGCACATGCTGTCCATCAAGGGCCGTGAGCCCTTCATCCGCATGCAGCTGTGGCTGAGCGATGCCAACAATGTGGAACGGCTGCAGCTGCTCAAGAATGAGCGCAGGGAGGCCAGCAAACGGCGACGCAGCACTGGACCCAACCAGCAGGACAACAGCAGTGATACCTCCAGCAATGATACCAATGATTTCTACACCAGCTCCCCGGGACCCGGTTCGGTGGGCTCCTCGGTGGGCGGGGCACCGCCCAGCAAGAAGCAGCGCGTGCTCTTCTCCGAGGAGCAAAAGGAGGCCTTGCGTTTGGCCTTCGCCCTCGATCCGTATCCAAATGTGGGCACCATAGAATTCCTGGCCAATGAGCTGAGTCTGGCCACACGCACCATAACCAACTGGTTCCACAATCATCGCATGCGCTTGAAGCAACAGGTGCCGCATGGTCAACCGGGCCAGGACAATCCCATACCCAGTCGTGAGAACACCAATTCCACACCCTTCGATCCCGTCCAGTTTCGCTTGCTGTTGCAGCAGCGTCTGGTAGAGTTGCACAAGGAGCGCATGGGTCTGGGCGGTGCACCCATACCCTACCCACCCTACTTTGCGGCGGCTGCACTGCTGGGACGCAGCTTGGCGGGCATACCGGGAGCGGCGGCGGCCgcgggagcagcagcagcggctgcaGCGGTGGGCGTTGTCGGCGGTGATGAGCTGCAGGCCCTGAATCAGGCCTTCAAAGAGCAAATGAGCGGCCTGGATTTGTCCATGCCCACCTTGAAGCGCGAACGCAGCGATGACTATCAGGATGACATGGACCTGGAGGGGGTGGGGAGTCGTCATATGAGTGACAATGAATCGATGGAGGGTCCCGAGGGTGAGTCGCAGCCCGACTATGAGAAGGCGCTGCAGAAGTCGGCCCTGGCCTCGGCGGCAGCCTACATGAGCAATGTGGTGCGTAGCTCGAGGCGTAAGCCGGCTGCACCGCAATGGGTGAATCCGGCACAGACCACTCCCGGCGCCGTTAGCGAAGCCGAGCGCATTATcaatggtgtgtgtgtgatgcaACCCTCGAACTATGCCAGCGAGGAGTCCGAACAGAAGGCAGATTCGGTGGTCAGTGAAAACGAACCGGAGATCGATCATCGTTTCATGGAGCCGGAGGTGCACATAAAGCAGGAGGACGatgacgaggaggaggagcagcagcagcaggagaagACGGTAGAGTCGGCGGACCTCAAGGTGATCAATGAGGAGAAGCTGCGTCTGGTGCGTGTGCGTCGTTTGAGCAGCAGCAATGGCGGCGCAGCGGTAGCCACGGGCGAGTCCGAAGAAGCGCCGGCGGTGACCACAGCCGGCTCCTGGAATTACTAG
Protein Sequence
MSKASQQPNPLPQPSTNSEYEKLARATLAEKEVNTLKEQLSTNSPGSNNDTSNDNNTAATAATAAATAAAASLANDEDNDSDKLLNSSIVAAAITLQQNGGNLLANTNTPSPSPPLLSAEQQQQLQSSLQNGGAVVGGACLNPKLFFNHAQQMMMEAAAAAAAAAAAAAAAAAVQQQQSPLRSPSADVSSLVAAGGGGGVQSIEQTPERARADVAHSNNNSSSNKQQADDDDEEEEEEEEEEEEEEEEDEVDEEEEEDNSSLQSNADELEQQQQQQQEARTDTAATVANTVNAADEEDMDEDDIQEAEASLNVSNNHNNDSNNSCSRKNNSSNNNSSSNSGNNVAQRDNNDNEPHVVDDLDCTNNNTNTNNNNNNNNKSSSNEKRKKRNNNNNQPAVLLAAKDKEIKALLDELQRLRALEQTHLVQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAATITNNNNNNNNNNNSNNSGQNKDQSNSSANEQTVAVVQQEPTAAAAAATTATAAAAAAAAVAMLVDADDDDDDEEEQQQQQQQQQQQQQELATDRTAEQDEDEEDDNDEQDVVMSSNTNNHPNEGNELKIKKEQHSPLDLNVLSPQSAIAAAAAAAAAAACANDPNKFQALLLERTKALAAEALKNGAVAAAAAAASEEKTLDAAEGATKNETAEKVASAEQQQQQQQQQQQQQQQQQPPHATLEEQLVNSYWRRGFEGNGSSKTPTIYQNSLPPPLPPPPTVAAAAAAATLTTPQQQQQQQQQQQQQPQHGPSSTALLSQLVNSTFSHPSRLDAGNSHHQQQQHQLHHSHNSSNNSSASSSSNNSSSNSHQNQSNCPSGTPQPSGSSSGDILNHVGHHPVGHHHSHHGHSQLLHQAAAAAAAAHQFDSNSSTSSTSTPNSTAQLAASIANSSKSLLQAAAAAAAEDNNNSLTPNANAAAAAAAMAAHAQHAAALGAPSFLPFQFAAAAAAGQDARAHYRFADAELQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGAGGSGGDDSMTEDRIVHILSEASSLIKNNVAAVQQQQQQQHQHQDTHSNEDSKSPPQSCSSPFFKVEQQLKQQHHSAEHRDQRDAVVAAAQQQQQREQREQREQREAAQREQQQRLRQEDLAQDKMARWYQELMARPREAAFPSFLLSPFFGGAAGMPGAGNAFPGANAFPAAMAADENIRHAFEREIAKLQQQHQQQQQQQQHQQQAVAGFPLSSLMALQQQVLNGAQDLSLAGKDIKLNGQRASLDHSSSSSKDGDRDDSFPSLHGRKSEGGGGGGNTPAPPAPPVLTNASSGASGNAPAPAGASNSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHSQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQISQGLASKMQAASLPMQKMMNELKLQEPAQAQHIMQQMQAAAMSAAMQQQVQQQQAQQAQQQQHQSHQQQQHQQAAQAAAAAAAALHHQNMLLTSPGLPPQHAISLPANPEQVRANANASGSVSSGEEKKPMLMPVHSGAHPANAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNSTPFDPVQFRLLLQQRLVELHKERMGLGGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAVGVVGGDELQALNQAFKEQMSGLDLSMPTLKRERSDDYQDDMDLEGVGSRHMSDNESMEGPEGESQPDYEKALQKSALASAAAYMSNVVRSSRRKPAAPQWVNPAQTTPGAVSEAERIINGVCVMQPSNYASEESEQKADSVVSENEPEIDHRFMEPEVHIKQEDDDEEEEQQQQEKTVESADLKVINEEKLRLVRVRRLSSSNGGAAVATGESEEAPAVTTAGSWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2