Lbim012683.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- nfxl1
- Assembly
- GCA_948107665.1
- Location
- OX403607.1:13223253-13225727[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3 2.3e+04 -7.8 5.6 15 19 135 139 134 139 0.81 2 18 0.016 1.2e+02 3.2 0.3 4 10 170 176 169 177 0.97 3 18 4.7e-07 0.0036 17.6 15.9 3 19 187 203 186 203 0.95 4 18 2.4e-05 0.19 12.2 16.4 3 18 240 255 228 256 0.91 5 18 1.6 1.3e+04 -3.3 1.4 5 10 280 285 280 285 0.89 6 18 2.7e-08 0.00021 21.6 11.5 1 19 291 309 291 309 0.98 7 18 3.9e-05 0.31 11.5 21.2 3 19 346 362 345 362 0.93 8 18 3 2.3e+04 -5.3 2.2 5 10 385 390 385 390 0.88 9 18 0.00039 3 8.3 16.6 2 18 397 413 396 414 0.91 10 18 3.5e-08 0.00027 21.2 16.9 1 19 423 441 423 441 0.99 11 18 0.00031 2.4 8.6 6.4 9 19 489 499 487 499 0.89 12 18 0.0014 11 6.5 7.9 1 12 509 519 509 519 0.96 13 18 0.44 3.5e+03 -1.5 3.5 14 18 548 552 548 553 0.87 14 18 0.21 1.6e+03 -0.4 0.4 7 12 568 573 568 580 0.81 15 18 2.9e-05 0.23 11.9 5.1 1 11 589 599 589 600 0.97 16 18 1.1 8.8e+03 -2.8 1.6 15 18 614 617 613 618 0.83 17 18 0.0011 8.4 6.9 15.8 3 18 630 646 629 647 0.87 18 18 2.1e-05 0.16 12.4 11.8 1 16 688 702 688 707 0.86
Sequence Information
- Coding Sequence
- ATGGCGCGACGTTATCGGGATGCCGCAGCAAAACTGCAAATGAACGTGCAAAAACATCTGAAAGAAATGAAGGATCACCTATCCTCCTCCGAAGATGAGGAACCTTACGAAGCCAGTGTGTTAGAAGGAGTATTCCAGAGCTACTGGCGTGGAGGTGGAGACTCTCACATGCTGAACAGAACCAAGAACCTTCTCGAAGAAGCGCTAAGTGGTCGTTCGGTCACTTGCCTCATATGCATCGCATCCATCAAGCGAAACCATGCCATTTGGACCTGCGATCACTGCTACTCCTACTTTCATCTCTCGTGTATTCAAAAGTGGGCAAACGACAGCATCAGTCTGCGTAGCGAAGACAACGACGGCCCGATTAGGGTAGTCCTACAGAAAAAGATCGAATGGTGTTGTCCAAAATGTCGGCAAGCGTACAGCAAAGAACAGATACCTAGAAAGTACAGATGTTTTTGTGGTAAAACTGATGATCCACCTCAACACCCATGGCAGATACCCCACACTTGTGGAGAGGTGTGTGGAAAGAGGTTATCTGCTGGAGACAACTGCAAACATAAATGTTTACTACTCTGCCATCCTGGACCCTGCCCTCCTTGCCCTCAAATGGTGAATGGAATATGCTACTGTGAAAAAGAACGAAAGAAAGTTAGATGCAGCTCTGCGAAGTGGTCCTGTGGCCAGCAGTGCAAGAAAATTCTCCCGTGTAAAACTCATAAATGTGAAAATGAGTGCCACGATGGTGAATGTGCTCCATGCAATTACACTAGTGTACAACCGTGCCAGTGTAGAGCAGAGAAGTCAAAACGACCATGCAATGATCCATTTTGGCGGTGCACTAAACCATGCAATAAACCTTTCTCCTGTAGCTATCATAAATGTGATCAGATATGTCACTCTGGATCATGTGGCTCTTGCCCGAATTCAGGCTTGCGATCATGTCCCTGTGGAGCGGACCAACGCTTTGTCGAATGTCCTGATATCATGGAAACCTGTTTAGGTACCTGTAGTAAAAAACACGACAATTGTGAACACCACTGTCCTGAAAAATGTCATAAAGGGCCATGCCCACCATGCCAAGTCCTTATACAGAAGAGATGCCTATGTTCTACTCATACAAGATCTCTTCCTTGCAGTAAGGAATTCAAGTGTGAAACAAAATGCAGAGGCACTAGACCTTGTAGGAAGCACCCGTGTGCAAGAAAATGTTGCAATGGTAACTGTCCTCCATGTGAGAAAACCTGCGACAAGCCCCTTCATTGTGGACGGCATAAATGCACCACTATCTGCCACCACGGCCCCTGCTACCCGTGTCCTCTGGAGTCTAAAGTCACTTGTAAATGTAAAGAAACCTATCTCACCGTCCCATGCGGAAGGGAACGGTTTGTAAAACCACCGAAATGCAGTCTGCCTTGCAAGTTTAAATATAAATGTGGCCATTCAGTTGAAAACAAACATTCCTGCCACTTTGGAGACTGTCCTCCCTGTAAGGCTATTTGCAATAAAGCTTATCCCAAATGTGGCCATGATTGTGAAAGTACATGCCACGAATTTGTAGCTGTAGTTTTTAAACAGGTGGAGAAACCAGCGACACCTTGGGAGGTTCAACCACCAAAAACTAAGATTATGACATTGGACTGTCCACCATGCAATGTTCCTGTGTCTATTGTGTGTTTTGGAGAACATGAGACTGAAGAACAACCGTGTCACACTGCAGCCAGACGGCCTTGTGGCCGTGAGTGCGGTAGAGCATTAGCTTGCGGGAACCATAACTGTACTCTTCTCTGTCACCTAATGAGCTACGATCCGGAGTACCCAAATGTGCCTTACAGTTGTAAACCCTGTGACCGAGGCTGTGAAAAACCCCGTCCAAAAAAGTGCACTCACAAATGTGCCAAAGGATCTTGTCATCCTGGACAATGCCCTCCCTGTGACATATACGAAAGAATATCATGCCACTGTGGTACTACGGAGCTGTACCTACGCTGCCGCGAACTCAGCACGGCTACTGAGGAAATGCTATCTTGTAAACAGCAATGTCCCAAAAATTTGGAATGCAGCCACCGCTGTCGTAATACTTGCCATCCCGGACCATGTGGCATACAAATATGTACAAAGAAGACCAAAATACACTGCCAATGTGGAAACTTAAAGAAAGATGCCCCGTGCAATACTGTGAAAAACGGAGAGGCTAAGGTTTTATGTGATGAATCATGCGAGGCGAAAAAGCAAGCTGCAAAAATTGAGAATGAAAAAGAGAATGAGAGACTAAAACTTTTAGAAGAAGAGAGAAATAAAAAGGAGCTTGCTGAATATGAGTGGAAACTAAGCGGAAAGAAGAAGAAATATAAGGAAAAGAAGGTTATAGTCAACAAAGATGAACGCAACTGGGTGCAAAAGTACTTGATGTATATACTTTCAGTTTTTGTTGTCATCTTGGCAGCACTATATTTCATATTTTATGTGTGA
- Protein Sequence
- MARRYRDAAAKLQMNVQKHLKEMKDHLSSSEDEEPYEASVLEGVFQSYWRGGGDSHMLNRTKNLLEEALSGRSVTCLICIASIKRNHAIWTCDHCYSYFHLSCIQKWANDSISLRSEDNDGPIRVVLQKKIEWCCPKCRQAYSKEQIPRKYRCFCGKTDDPPQHPWQIPHTCGEVCGKRLSAGDNCKHKCLLLCHPGPCPPCPQMVNGICYCEKERKKVRCSSAKWSCGQQCKKILPCKTHKCENECHDGECAPCNYTSVQPCQCRAEKSKRPCNDPFWRCTKPCNKPFSCSYHKCDQICHSGSCGSCPNSGLRSCPCGADQRFVECPDIMETCLGTCSKKHDNCEHHCPEKCHKGPCPPCQVLIQKRCLCSTHTRSLPCSKEFKCETKCRGTRPCRKHPCARKCCNGNCPPCEKTCDKPLHCGRHKCTTICHHGPCYPCPLESKVTCKCKETYLTVPCGRERFVKPPKCSLPCKFKYKCGHSVENKHSCHFGDCPPCKAICNKAYPKCGHDCESTCHEFVAVVFKQVEKPATPWEVQPPKTKIMTLDCPPCNVPVSIVCFGEHETEEQPCHTAARRPCGRECGRALACGNHNCTLLCHLMSYDPEYPNVPYSCKPCDRGCEKPRPKKCTHKCAKGSCHPGQCPPCDIYERISCHCGTTELYLRCRELSTATEEMLSCKQQCPKNLECSHRCRNTCHPGPCGIQICTKKTKIHCQCGNLKKDAPCNTVKNGEAKVLCDESCEAKKQAAKIENEKENERLKLLEEERNKKELAEYEWKLSGKKKKYKEKKVIVNKDERNWVQKYLMYILSVFVVILAALYFIFYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01172943;
- 90% Identity
- -
- 80% Identity
- -