Lbim018944.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lomographa bimaculata
Gene Symbol
-
Assembly
GCA_948107665.1
Location
OX403600.1:10065109-10084749[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 9e-05 0.0061 17.3 0.1 3 23 132 152 131 152 0.97
2 16 8.2e-07 5.6e-05 23.7 1.2 1 23 158 180 158 180 0.99
3 16 5.1e-06 0.00035 21.2 2.7 1 23 186 208 186 208 0.99
4 16 3.3e-06 0.00023 21.8 2.6 1 23 223 245 223 245 0.98
5 16 3.1e-07 2.1e-05 25.1 1.4 1 23 276 298 276 298 0.99
6 16 0.00014 0.0098 16.7 2.8 1 23 304 326 304 326 0.98
7 16 1e-05 0.00069 20.3 2.1 1 23 332 354 332 354 0.99
8 16 0.033 2.2 9.3 1.8 1 23 361 383 361 383 0.98
9 16 5.5e-07 3.7e-05 24.3 2.3 1 23 389 411 389 411 0.99
10 16 0.23 16 6.6 1.1 1 23 418 440 418 440 0.98
11 16 2.2e-06 0.00015 22.4 1.5 1 23 446 468 446 468 0.99
12 16 0.00042 0.029 15.2 0.7 1 23 475 497 475 497 0.99
13 16 2.4e-06 0.00016 22.3 1.8 1 23 503 525 503 525 0.98
14 16 0.0018 0.12 13.2 0.3 1 20 531 550 531 553 0.93
15 16 3.5e-05 0.0024 18.6 1.4 2 23 560 581 559 581 0.96
16 16 3.2e-06 0.00022 21.9 1.4 1 23 587 610 587 610 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAGCAAATCAAAGCTGAGCCGATGAGTTTCTACTCATCACACACACATGTACACCCCGGGCCAACTATAGTGCGGTCAGAGTCTCACCCTATCATCAACATGAACTCTCACCACCTGCCCCACCCCCACCAGGAGGACTCTAAAGATAGTTTGATAATACAACAACAAGTACAACACCAGGATCTCATGGAGCAACACCAGCAACAAGAGTTGCAGCAACAACAAGATGATGAGCTCAGCTTTAAAGGAATGGATGATGAAGGTGTTGACATGGATATGGACGGGCGGCAGTGTTCACAGGGTATGGGGGTGGACATGGGATCAGTTACTAAAATGGAAGTACCAAATGGCGGACCAAACACTCCGCGTTCAAAGCCCCAAGCCTGTAAGGTTTGCGGCAAAGTCCTTTCGTCCGCTTCATCATATTACGTCCACATGAAGCTTCATTCGGGAAACAAGCCTTTCCAATGCACAgtttgcgacgcagctttctgccgcaagccgtatttggaagtacacatgcgtacacatacgggcgaacggccttttcaatgcgatctgtgcctaaagcgtttcacacagaaatccagccttaacacgcacaaacgagtgcacacagatgagcacatgcgcgcgttgttggcgaaggaccggccctacaaatgcgagctctgtcagatgcggttcacgcagagttccagcctcaaccgacacaagaaaatacacacggAGGAAcacagacgcgcgctgctggcaaaggaacggccctaccagtgcgAGGAGCACATCCAATCGCTGATCAACAAAGTgcgcccctatcaatgcgagatctgtgacaagcggttcactcagaagtccagccttggcactcataaacgtatacacaccggggagcggccgttccagtgcaccgtctgcctcaagtccttcacgcagaagtgcgcgctcaatttgcacgaaaagatacatacgggcgagcggccctatcagtgcgacgcgtgtctcaagcgcttcacgcagaagtccagcctcaatattcataagaggacacacacagTCCagggcagaccgttccagtgcctgtcgtgcccggccgccttcacctgcaagcaatacctggagattcacacgcgcacccacaccggcgagcgaccgtatcagtgcgacatctgcctgaagcgcttcacgcagaaatccagtctcaacatccacaagcggacgcactcagtgcaaggccgccccttccagtgcctggcctgccccgccgccttcacctgcaagcagtacctggagatccacaaccgcacgcacaccggggagcggccctaccagtgcgacgtctgtctcaagagattcgcgcaaaagtctacactcaacatacacaaacgaacgcacacagtgcaagggcggccgtaccaatgcatggagtgtccggcggcgttcacttgcaagccgtacctggagatacacatgcgcacgcacacaggcgaacgccccttcgagtgcgaagtctgttacaaacggttcacgcagaaatccacgctcaacatacacaagcgaatacacaccgGGGAACGTCCTTATGCTTGTGATATCTGTCAGAAACGTTTCGCCGTGAAGAGCTATGTTACAGCTCACAGATGGTCACACGTGGCCGACAAGCCGTTGAACTGCGATCGGTGCTCGATGACGTTCACATCCAAGTCTCAGTTCGCGCTGCACATCCGCACACACTCCACCGGCCCTTGCTATGAGTGTAGCGTCTGTGGACGCACCTTTGTACGGGACAGTTACCTCATACGGCACCACAACCGCGTTCACCGCGAGAACAACCACAGCAACATGTCGGCCAACAGTATCGGTAACATCAACAGCGTTGCCACCAACACCAACAACTCTAACCACGGCAACTACGACTCGCCCGGCGTCTGTGACTTGAGCTTCGTGCCGATGGTGAACCGGTACATGACGTCACAAGGCACGCAGGTGTCGATGCAAGACTCGCAGAGCAAAATGTCCGCCATGTCGCCGCAATCCATCGCCTCTATTTCATCGCCCCCTCCCCCGCATACCCCAACGCCCCAGCCCCAAATGTCGAGTCAGATGCATCTCGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYSSHTHVHPGPTIVRSESHPIINMNSHHLPHPHQEDSKDSLIIQQQVQHQDLMEQHQQQELQQQQDDELSFKGMDDEGVDMDMDGRQCSQGMGVDMGSVTKMEVPNGGPNTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALLAKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCEEHIQSLINKVRPYQCEICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLACPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECEVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSTGPCYECSVCGRTFVRDSYLIRHHNRVHRENNHSNMSANSIGNINSVATNTNNSNHGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDSQSKMSAMSPQSIASISSPPPPHTPTPQPQMSSQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
-
80% Identity
-