Lbim016889.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lomographa bimaculata
Gene Symbol
-
Assembly
GCA_948107665.1
Location
OX403595.1:13757733-13781973[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 3e-05 0.0021 18.8 1.4 1 23 418 440 418 440 0.96
2 20 0.004 0.27 12.1 0.5 1 20 446 465 446 468 0.93
3 20 2.1e-05 0.0015 19.3 5.6 1 23 487 509 487 509 0.98
4 20 9.9e-05 0.0067 17.2 4.1 1 23 515 537 515 537 0.99
5 20 3.8e-05 0.0026 18.5 5.3 1 23 543 565 543 565 0.97
6 20 5.4e-06 0.00037 21.2 6.8 1 23 571 593 571 593 0.98
7 20 9.6e-07 6.5e-05 23.5 1.9 1 23 599 621 599 621 0.97
8 20 0.0001 0.007 17.1 6.7 1 23 627 649 627 649 0.97
9 20 0.0001 0.007 17.1 6.5 1 23 655 677 655 677 0.97
10 20 4.9e-07 3.4e-05 24.4 1.9 1 23 683 705 683 705 0.98
11 20 5e-05 0.0034 18.1 7.9 1 23 711 733 711 733 0.98
12 20 2.6e-05 0.0017 19.0 6.6 1 23 739 761 739 761 0.98
13 20 2.9e-06 0.0002 22.0 5.6 1 23 767 789 767 789 0.98
14 20 8.3e-06 0.00057 20.6 5.0 1 23 795 817 795 817 0.96
15 20 1.1e-05 0.00075 20.2 5.2 1 23 823 845 823 845 0.98
16 20 3.1e-06 0.00021 21.9 6.0 1 23 851 873 851 873 0.98
17 20 6e-05 0.0041 17.9 7.9 1 23 879 901 879 901 0.97
18 20 1.6e-06 0.00011 22.8 5.3 1 23 907 929 907 929 0.98
19 20 0.00034 0.023 15.5 0.3 1 23 936 958 936 958 0.97
20 20 0.027 1.8 9.5 5.4 1 23 968 990 968 990 0.99

Sequence Information

Coding Sequence
ATGAATCCGGAACACCATAATATCAACACGGGTGGTGGTCAGCCTCCTGGGAGTTCAGAGGTTCGAGTGGGCCAGAGAGTGCAAGCTGCACAACAGCAGCAGCAAGGGTCCTTGCCTGCGACAACGTCAGCCACGGATTTGAGAGTGAATACGGCAGCTGTGAATGTAGCTTTGTCCAGCGTAGCAAAGTATTGGGTGTTCACAAATCTATTCCCCGGACCTATCCCACAAGTTTCAGTGTATGGATTGCCTACTGGAACTAGAATTGAAAATGGAAAACCTGTTCAGGATATCGGTCAACATGCAAGCATACTCAACGGAGATCCAAATATCATACTGGGCCACCATGGTGGGCAGCCACAAGTTACTGTATCTGCTGGTGCCCAACAAATACCCGTGTCTCAGATCATTGCCACACAATCAGGACAAACTCATGAGGCACTGGTGGCTCATAGCCAACAACAAGAGCTGGTCCAACAGGCAGGAGCAACCCAGGTTTCGGTCTCGGGGCAGGCAACTCATCAGCAGGTACCCAATAATCGGGTCGAATTTGTACAACACCATAACATTGATATGGGTCACCATTCTCAGCAGCACATTTTGCAGCAGCAACTAATGACAGCGCGTCCTGAGCACACCAACCAACAGATACAACTCACTGTCAGCGAAGATGGCATTGTTACCGTCGTTGAGCCAGGGAGTAGTAAGATGGTGGACAAGGAAGATCTTCATGAGACAATCAAGCTTCCCTCAGACCATACGTTGACTGTTCACCAGCTGCAACAGATTGTGGGACAACAGCTTGGAACACAAGTGCTAGAGAACGTGGTTCGAATCGAACAAGCGACGGGCGAGCCTGCCAACATTCTCGTAACGCACAACGCGGATGGGACCACATCCATCGAAGCGAGCGCCTCGGACCCACTCGCTATCGTCAAAGATGAAAAAACGCATGGGAAGCTAGAAACAGCGCAGTTCATACCTGCCGAAATCAAGGACATCAAAGGCATTGATTTAAAGAGTGTAGGGGCAATGGGAATGGAAGGCGCAGTTGTAAAAATATCCACCGGAGCAGACCATGACATGACAGCTATGTATAAAGTCAATGTTGAAGACCTCTCCCAACTATTGGCGTATCACGAAGTCTTCGGGAAACTCAATGCTGATGGCCAAACGCAAAATAAGGGTGATTTAGAAATCGAAGTGCCAGGAACGAGCCAGATGTCTGAAGCGGAATCGTCTCCCGGCCACCACGCCTGTGACATCTGCGGGAAAGTGTTCCAGTTCCGTTATCAACTCATCGTACACAGACGATACCACGGCGAGAGCAAGCCATACGCGTGCCAAGTCTGCGGATCATCATTCGCCAATCCCGTCGAACTGTCGCGGCATGGGAAATGCCATCTTGCTGGAGATCCAACCGAGAGGCACGCCAAGAGGATGGCACAAGATAAACCCTACGCCTGCACAACTTGCCATAAAACGTTCTCGCGTAAAGAGCATCTAGACAACCACGTCAGAAGTCACACTGGAGAGACGCCTTACAGATGCGAGTTCTGCGCCAAAACATTCACACGCAAAGAACACATGGTGAACCACGTTCGGAAACACACTGGAGAGACCCCGCACCGCTGCGACATTTGCAAGAAGAGCTTCACGAGGAAGGAGCACTTTATGAACCACGTTATGTGGCATACAGGTGAAACGCCCCACCAATGTCAAACGTGCGGTAAGAAGTACACTCGAAAGGAGCACTTGTCGAACCATATGCGATCTCATACGAACGATACGCCATTTAGATGCGAGCTGTGTGGAAAATCATTCACAAGAAAGGAGCATTTCGCCAATCACATTTTGTGGCATACTGGCGAAACACCCCACCGTTGCGACTTCTGTTCCAAAACCTTCACTCGCAAAGAGCACCTTTTGAACCACGTCCGTCAACACACCGGCGAATCACCGCACCGCTGCAACTTCTGTTCGAAATCGTTTACAAGACGCGAGCACTTAGTGAATCATGTACGGCAACATACCGGCGAGACTCCCTTCCAGTGCGGATACTGTCCCAAGGCTTTTACCAGAAAGGATCACCTCGTGAACCACGTCCGTCAGCACACCGGGGAATCCCCGCACAAATGCTCGTTCTGCACAAAGTCCTTCACGCGTAAAGAGCATCTGACGAACCATGTGAGGCAACACACCGGGGAGTCCCCCCATCGGTGTACCTACTGCGCCAAATCGTTCACGAGGAAGGAACACCTTACCAACCATGTCAGACAGCACACAGGCGAAACCCCACACAAGTGCACGTATTGCCCGCGAGCGTTCTCGCGGAAGGAGCATCTGAACAACCACTTGCGGCAACACACGGGCATCACGCCGCACGCCTGCTCTTATTGCAATAAGAGCTTCACGAGGAAAGAGCATCTCGTCAACCATGTTCGGCAACACACGGGCGAAACTCCGTTCAAGTGCACATTCTGTTCGAAGTCGTTTTCGCGCAAGGAGCACCTCACAAACCACGTGAACCTTCATACCGGGGAGACGCCGCACAAATGTCCCTTCTGCACTAAGACATTCTCCAGGAAAGAACACCTCACGAATCATGTCAGAATTCATACTGGCGAGTCGCCTCACCGCTGCGATTTCTGCCAAAAGACATTTACGCGCAAGGAGCACCTCACAAACCATCTGAAACAACACACCGGAGACGTCTCTCACACATGCAAAGTTTGCTCCAAGGCTTTTACGAGGAAAGAACATCTGATTACTCATATGAGATCACACACTTGCGGCGAACGACCGTACAGCTGCGGAGAATGCGGCAAATCCTTCCCTCTCAAAGGCAATCTGATGTTCCATGAACGATCACATCAGAAATCCGGTGGCGGTGCAAGACCCTTCAGATGTGATGTCTGCTCCAAAGACTTCATGTGCAAAGGTCACCTGATCTCTCACCGTCGCACGCACGCGGATGCGGGCGCGGCGCCTGCCACTGAGTCGCGACCGGAGGCCGAGGAGGACTGCACCCCCAAGTGCGTTAAGATTGAGATAGACCCACTCGCAATGGAAAGTAAACCCAAGATAGAAGAAGTGCGAACGGTTGAAAACGTCATAATTCCACAAACATCGCCAAACAACCCTACTGTGATGCAGATTACCAACCAACAAGTTCGAGTGGCGCCCGCATCTACGACCTCCGGAATAACCACTGCAACATTCACCCACACCGTCTCAAACCAACATCACTCCGGTACAACGATTGCCCACCATCCTGTCAGTGTGACCTACTAG
Protein Sequence
MNPEHHNINTGGGQPPGSSEVRVGQRVQAAQQQQQGSLPATTSATDLRVNTAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDIGQHASILNGDPNIILGHHGGQPQVTVSAGAQQIPVSQIIATQSGQTHEALVAHSQQQELVQQAGATQVSVSGQATHQQVPNNRVEFVQHHNIDMGHHSQQHILQQQLMTARPEHTNQQIQLTVSEDGIVTVVEPGSSKMVDKEDLHETIKLPSDHTLTVHQLQQIVGQQLGTQVLENVVRIEQATGEPANILVTHNADGTTSIEASASDPLAIVKDEKTHGKLETAQFIPAEIKDIKGIDLKSVGAMGMEGAVVKISTGADHDMTAMYKVNVEDLSQLLAYHEVFGKLNADGQTQNKGDLEIEVPGTSQMSEAESSPGHHACDICGKVFQFRYQLIVHRRYHGESKPYACQVCGSSFANPVELSRHGKCHLAGDPTERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCQTCGKKYTRKEHLSNHMRSHTNDTPFRCELCGKSFTRKEHFANHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNNHLRQHTGITPHACSYCNKSFTRKEHLVNHVRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDVSHTCKVCSKAFTRKEHLITHMRSHTCGERPYSCGECGKSFPLKGNLMFHERSHQKSGGGARPFRCDVCSKDFMCKGHLISHRRTHADAGAAPATESRPEAEEDCTPKCVKIEIDPLAMESKPKIEEVRTVENVIIPQTSPNNPTVMQITNQQVRVAPASTTSGITTATFTHTVSNQHHSGTTIAHHPVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00634709;
90% Identity
iTF_00143231;
80% Identity
-