Lbim008888.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- ttk
- Assembly
- GCA_948107665.1
- Location
- OX403584.1:5757253-5765507[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-16 3.9e-13 49.3 0.0 1 42 325 367 325 370 0.94
Sequence Information
- Coding Sequence
- ATGTCGCagcagtacagcctgaggtggaacaaccaccagccgaacttcatatccatgttcacaacgttgctcaacactcagaccctggtcgacgtaacgctagctgctgaggggaagcacctgcaggcacataaggtggtgctgtcagcatgcagcacatattttcaggctctattcgttgacaacccatccagacacccaattgttatcctcaaggatgtaaccttcgcagaccttcgcaccatggttgatttcatgtactacggggaggtgaatgtcaccgaggaacagttaccaAAGGTGCTGGACACAGCCAAACTGCTCAAAATAAAAGGACTGACAGAGATGCCGGACTCCACTTCCCTGACGCGAGCCCAGGGCGGCCCGGCGGCTGAGTTCCAGTCGCCCGCGGGACATGTCGACGCACAACGCATGTCTGTCTCTCCTGCCTCCTCGCCCTCTATTAAACGGAGAAGACGCAGGAAAAGCTCAACTGGCTCAACATCACTCAACATAGTGACCGAAGATCCCAGCGGAGAGGAAAACCAAACTGTCGAACTAGTGCGAGACGGGATCACTCTCAGCAGTGTGCCGCAGCGCCGGCGGGACTTCCACGCAGATAGACAGGACACACATCATCAGAATCAAGAAAACCCACACAATTTGAATATGGACCATTTAGGAGTCGAGAACCCCGCAGCCATGGCTCAAGGAGGCCAGTGGAGTATGATGGAGCATCCGTACCCACGGTATTCTAACGCGTGCGGGCTGGCCGGAGGCGCGTTGCAGACGGATGCCGGCATCTATATGAACAACGTGATGAATCAGCACTTGGAGGGAGATTTGGGAGAGTACGCTCCTCCGCTCGGAGTGGCCCATCCCTCCCCGGGGCCGAGCTGCGCCGTGGAGGCGCCGCCGCAGCCCGAAGCCCCTGCAATACCCGTGAAGCGCCGCCGCACCACCAACCCGCAGTCGGAAGAAAACTTCCAACGCGCCCTCGAAGCGGTCCGCTTCGGCGGCATCGGGTTCTGCAAGGCCGCTCGCATGTTCGGCGTCAACAACCGAACTCTGTGGCTCGAGTACAAGAAGAAGGGCTACCCGAACAACCGACCGAGTATCAAGAGCCGCATCAAGCGGGAGCACACCACTCCGCCGCCGGACCAAAAGGACGAGCCTGCGGCGCAGGAGCAACAGATGGCGCTTATCTGCCCCCCGCACCCGGTCTCGGTTGGGTTCATCGACTCGCGTCCGCTCGATTTCCCGCTTCAGGGCATGGCTCACACGTCCCCCCTCAACCTTTTAGGGGTGAATTTCAATTCGATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHLQAHKVVLSACSTYFQALFVDNPSRHPIVILKDVTFADLRTMVDFMYYGEVNVTEEQLPKVLDTAKLLKIKGLTEMPDSTSLTRAQGGPAAEFQSPAGHVDAQRMSVSPASSPSIKRRRRRKSSTGSTSLNIVTEDPSGEENQTVELVRDGITLSSVPQRRRDFHADRQDTHHQNQENPHNLNMDHLGVENPAAMAQGGQWSMMEHPYPRYSNACGLAGGALQTDAGIYMNNVMNQHLEGDLGEYAPPLGVAHPSPGPSCAVEAPPQPEAPAIPVKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPDQKDEPAAQEQQMALICPPHPVSVGFIDSRPLDFPLQGMAHTSPLNLLGVNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00913730; iTF_00390307; iTF_00390530; iTF_01208038; iTF_01209131; iTF_01208398; iTF_01209426; iTF_00818443; iTF_00818283; iTF_00250590; iTF_00250387;
- 90% Identity
- iTF_00913730;
- 80% Identity
- iTF_00913730;