Lmig003378.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- Dcp-1
- Assembly
- GCA_026315105.1
- Location
- scaffold36254:943507-1129123[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.71 3e+03 -1.3 0.0 26 49 140 163 134 166 0.81 2 10 0.00074 3.2 8.2 0.1 22 45 164 187 156 190 0.87 3 10 4.5e-05 0.19 12.1 0.1 21 46 191 216 187 222 0.88 4 10 0.43 1.9e+03 -0.7 0.0 21 46 219 244 216 247 0.80 5 10 0.0089 38 4.7 0.3 22 43 248 269 228 283 0.84 6 10 0.16 6.9e+02 0.7 0.1 22 43 276 297 267 306 0.83 7 10 0.53 2.2e+03 -0.9 0.0 22 46 304 328 298 330 0.83 8 10 0.0052 22 5.5 0.1 21 46 359 384 352 387 0.90 9 10 0.024 1e+02 3.4 0.1 21 47 387 413 385 420 0.87 10 10 0.0015 6.3 7.3 0.2 18 47 440 469 432 472 0.91
Sequence Information
- Coding Sequence
- ATGGAGACAGATACAGAACAACATGCAAGTTCTGCCTGTGATGGGATTACCATCAAAGAAGAGCCGGTGGAGCTGGAACCACAAATGTCTCCTCCCCAAGAGATTGAGTTCGTATCAGTTAAAGAAGAAATTCCGTGTCTGCAGGAATGGGAGCAGCCAGAGGGCCATGATAATGCACAAGACCCACTGAGCTTCAATACAGAGGATTCTTCACCTCCAGACAATTTTATTGGACCTAGCACATCACATATTGATAAAATGGAGAATGAGGAAGATGAGGAGGAGGAGGCGGCTATGACTGAGTTTGATGGGCTGGAAATCAAGCAAGAAGTGGAGTCAACAAGTACTGGCAGTGAACCAGAAAGTACTAACCCCATTGGTATGGAGGACGACAATGGTACTAGCCTTAAGGTTCACAGGTGTGCCATCTGCCAAAAGACCTTTACAGAATGGCAAGAACTTACAAAACATATGCACACACACAAATATGAAAAACTGCATTCTTGCGATGTGTGTCACAAAATGTTCACTCAAAGTGCAGCTTTGAAAAGACACATTAGAGTTCACACTGGTGAACGCCCTTTCAGCTGTGACATTTGCAACAAGACATTCACACAAAGTAATAATCTGAAGCAGCATTCAATGCTGCACACTGGTGAACGGCCATACAACTGCGATGTTTGTAAAAAGGCATTTGCAACAAAAGGCCAGTTAAAAACTCATACACAGTTACACACTGGTGACCGCCCTCACAGCTGTAGCGTCTGCTACAAGACTTTCGTAACGAGTAGTCACCTGAAGGTACATTCAAAGCAGCATATTGATGACCGTCCGTTTAAATGTGGAATTTGTAACAAGACATTCATAGTAAGCAATCATTTGAAGCAACATTCACTTGTGCACACTGGCGATCGGCCTTACAGCTGTGGGGTATGCAACAAGACATTCAAAACAAATAGTGCCCTGAAGATACATAGTCAGCTACATGCTGGCGAACGACGTTATAGCTGTGCTGTTTGCGACAAAACATTCATTTCGAAAAGTCAACTGCAGTTACATTCACAGTTACACACTGGTGAACGTCCATACAATTGTGATGTTTGCAGCAAGGCTTTCTCGCAAAAATCTCATTTGAAGCAACACTTACTATTACACTCTGGTGAACGTCCCTACACCTGTGGTACTTGCAGAAAGACATTTCTCACAAACAGCAACCTAAAGATGCACTCAAAACTGCACACTGGTGAACGCCCATACTGTTGTGAGTTTTGTAACAAGAGATTCATAGCAAATAGTCAACTGAAAGCGCATATAAGACGGCACAATGGTGAACGCCCATACTGCTGTGGTTTTTGTCAGAAAAGATTCACACAGACTGGTCATCTGAAGAAGCACTTGCAGCTCCATACTAGGAATCACCTATAG
- Protein Sequence
- MATSNSKKVNDTAPHVKYTESDANAFVQPIQQTFPLGQEQEGPTVEQRTVSSDLDDVYPKQGQKRLALIFNHEKFMHPSNKERSGTQIDKLRLQECFKKYNFDIEPLKDNMKKSEIQEKLKEVAKRDHSETDCLAAVVLTHGNHKGGLAAYDEWYTEEELIGSFTSNNCVSLTGKPKLFFIQACRGDKTSVAARTFTDTVQADSPESNVFSVPEEADVLVFYSTYEGRVAYRDTEEGSWFIQELCNELNKNGEKDDLLTMLTRVNYNVAARRVRLSGIRERKQMPVIQSSLTRKFYLSAKPEFSEIGIKSKLEEMHNILLDLNSKKEKELPPRKTVRKPLVDKDWETPLPASMPTFPVVPEDNTVQQLKTYLDMFLNYEGNLLSEDAVDTGKLILSHLSMWKKMDTNRQKFLYENVIKFFVKYGRKWQYFRVLNISDSQIANIQGKSKQLSGSSQSVNSDKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00913077;
- 90% Identity
- iTF_00913077;
- 80% Identity
- iTF_00913077;