Lmig008566.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- -
- Assembly
- GCA_026315105.1
- Location
- scaffold241971:1709778-1925354[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7 4.6e+03 -2.4 0.0 59 72 525 538 504 540 0.67 2 2 1.7e-11 4.4e-08 32.9 0.1 8 71 799 855 796 859 0.90
Sequence Information
- Coding Sequence
- ATGCTAAATGGACACCCCGCATCTGTGTCGTATCGAAAGCAGGACGAAGAAAATGTTGCATGTGAGCAGTGCATTCAGCTAGGAGCACCTCTAACTAGTGGAGGTACTCCACCCTTGCCTAATAATCAGCCTCATCCTGCTGGACAGTCCTTGGTCAGTACTCACCATCAGCCCAGTGAACTTGCTTCTCAACCTGTGCAGCGACATAGTGTGCAGTGCAATCAACAGTCTGTTTCACTAAGTCCTCAGCAGTCAAGTGAAGATATAGCCTTAAAAATTACAAATCAGTACAGTGGGCAGATTATGGTACAAATTTCAGACCTCTGCAATCAGAAGTGTACACCACAATCAGTAAATTCTGAACCGCATTTGTTGACACAGCAACCACAGGATCAGAAAAAACAAGCTGAATCGCATATAACTCTTGCAATGGCAATACAAAACCAAAGAGAAATGGGAAGCTATCTGCAAATGACAAGTGATTCTAATGTACCAAGAAGCCCACTGATATCTCCAAAACCTGTATGCGTGAATCTTTGTATGACAGTTGAGACTCCTGAGACCCAGGGTCCTGTTATTTCAGAACTTGGATTAAATAAATTGGAAAAGCAGCAACAACAATGCCAGCAGAAGCAAAATACACCGAGCAGTATTTTGCAAGAGCCCCAGCAGCACATAGGTACTGCAGAGTCTGATACAGGCTCCTGTGCAGAAAGAGCTTTGCTGTTCCACAGTAATAGAGACTTATTGCAGAACAGGTCTCAGCCATTGCAACATTTGGAAAACAATCAAAGTGAACAGACTGATCTGAAGCTGGAACCAGTAATCCCTCGCCAGAAGTCACAAGAAGGGTCTCCTCAGTACTCTGACGAACAGGTGTCTTCTTCGGGGTCTGCCTCTCAATTAGTTTATCAGCATCTCTGTGCTTCACTTGCAAATAACATTCAGATGGTGGAGTGTGTGTCACAACCATCAGTAGTATGTCAGTTCCCAGGACATCTCTCTGTAAAGCACCAAGAACAGCAGGTGAAAATGTTGATGGGGTTTACTTGTAACATTTTGGCGCAGTTTTCACCTGCAGTTATGCAGCAGCAGTTACAGGACTCCGATAAGGTACAAGTTGCTCCTTCGTTAATGAAAACTGATGAGCAGAATTTGAAGGTGATTTCAAATGCAGATGATTTAAGGTTGCACAATGAAGAGGAAGATGAAATTTCAGATACAGAATCCATGTGCCAATCTTTGGCAGACAGCTTGACTTCCAATCTGAGTTCTACAGAGTCTGATAGGAGTGTTTCAGGTTTCACTGGGGTTTATGCAGAAAAGGATGTTGTTCCCCTTGGAAATGTCACTATTGAAGAAAGCCATCTTCCTCCTCTGGGTATGATAAATCACCCTCCTGTGGCTGTTGGAGATTCTGTGTACATCATGAATGATATAAAACGTCCATGGGTTCTTGGTACAGTGCAGGATATTGCATCAAAAAGTAACAAGACATTGTACACAGTGGAGTGCCTCAGTTCTAAAAACAGGAGAGTGAAGAAAACAATTAAAGAAGCTACTGGCTATCAGCTGGCCTATCCTAAGGTGCAAGATTTTCGTTTCTCTGTTGGTCATCGAATTATCTCAATTTTTCGGAATGGAAATTCAGATGAAGAGTACTATTCTGGTGTCATTGCAGAGCCACCCAAGTCAATAAACCATTATAGGTATCTCGTATTTTTTGATAAAGGAAGCTATCAGTATGTTAAACATGAAGATATATGTCTTGTTGTGGATGGCTCTCAAAGGATGTGGGAAGCTGTTCCAAAGGAAACTCGAGATTTTGTTCAGAATTACCTGCAAAAGTACCCAGAGAGAGCTATGCTTAAAGTGCAAGGAGGACAGTATGTCAGTACTGAGTGGAATGGGATTTGGTACAATGCAAAAGTTATAGAAGTGGATGCATCTCTTGCTCTGATGTCTTTTCCCCCTAAGGGGAAGTATGTAGAATGGATCTATAGGGGATCTGCTCGCTTATACCCTCTTTTTGAGGCACATAACAGGACCTGTAAGAAACAGTTTGCTCGCACAAGAGCATTTGCAAAGAAGGTATGTGCTCCATATATTCAGTACACAGGGAAAAACGAGGAAGAATTGGACAGAAAGATAAAAGAAGAACGTGAATCAGCCATGGAGGAATCTGAACCACCCTATCACTTCACTGCTCGAATGAACACATCATCCCAAATCACAGCCCAGAATCTACAATCTGCAGTAATTCCTCCTAAAAGGAAATTTTATCCGTGCTATTCTCAGGTGACTTATAAAGCACATATCTGTAAACCATCATGTCTGGTGGCTGGAAGTTCAGAAAAAGATTATGGCTGCTATCAGAACCTCTGGAGTCATCTCTCAGAACCATTATTAAATGGCTGGACAAGGGAGAAGGTGAAACAATCAAATTGTGTTTCTGTGTACTACAGAGCTCCATGCAAGAGCAGGTTACGTAATATTGAAGAGTTGCATAAATATCTGTTGAGAACTAAGTCCAAGTTGACTGTTGATCAGTTTGACTTTAATCACTGGGTGAGGTGCTTCCCAGAACTAATTAATGAAGAGAGCTTCATAAAAATTGAGGAAACACCCAAAATATGCCCCAAAGTCACATTTGCTTCTTAG
- Protein Sequence
- MGSVSGGGGVGAMGGVGQRGGGGDGNSGGGVGVGGQGGGAVDDGVTGLRLGDGSQVGGFGDGDVRGVHQVAVGADGDGGGAVGGVAGVHGGGHHRGGGVGGGGDHGGGGGAQVAGLSHGDGQDGAQDDLKPSKESSVLYYHLYSEVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -