Lmig013791.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- Bnc2
- Assembly
- GCA_026315105.1
- Location
- scaffold60291:237456-346762[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-25 4.1e-22 77.8 0.1 6 72 143 204 138 209 0.91 2 2 0.0057 15 5.5 0.1 28 73 222 280 208 284 0.79
Sequence Information
- Coding Sequence
- ATGTCAGTTGAAAATCCCAATATTGAGTTTCCATGGCAGTTTCACTTCCCACCATTCTTCACATTGCAACCTCACGCAGAGACAAGAGCAAAGCAGTTAGCAGCATGGAGGTCACTTGTACTGGAATGGTATGGAGCAACACTGCAAAGTAAAGTAGATTTGCGTGAAGCGGGTCGCTCTCCACCGTTTGCCAATGCCGCCATCAACAGGCGGTTGCCTGAAGAGGGCATTACGGCTGTAATGGAAGAGCTGGCTCGCACGGGGCATGCAGAACGTCTTGACAAGCAAGGCTATACCTGGGCTGTGCACTGTGGACGCACTTTGGATGAGTGGGCAGACTGCCTTCTCTCGTGGGCACGTGATAATGGTATGAGTGGAACAGACGCAATTGTTGATACTAGAACCATGGCGCTTGAGAAACGGAAATATGAGTGTAGTGCTTTACCTAAAGGATGGCAACGAGAAGAAGTTATAAGGAAGTCCGGACTCTCTGCCGGAAAAGTTGACGTGTATTATTATAGCCCAAATGGGAAGAAGTTTCGCAGCAAACCACAACTGGCTCGATACCTGGGCGACGCTCTAGACCTCGCCACGTTCGATTTCCGGTCTGGCAAAATCAATTCCCTGCTTCTCCGAAAAAACAAGAAGCAGAGGGGAACTCAATTTGATTACAGCAGAGGTGTCCGCAATGACGCCTCTCTAGTGCCTCCAATCAGGCAGACAGCATCAATTTTCAAACAGCCTGTGACTGTGCACAAGATGCAAGAAGGGAAAGTGAAAACTGATTTCAAGCATGGCCCACAGGAGAAACCAAAGCAGTTATTCTGGGAAAAGCGCCTAGAGGGGCTCCGTGCGTGTGATCTCGACGGTACAGAGTTTGACGCTATGGAGCTACCTCGGGCGCTTCGACCAGTGGGTCCACATGTTGGTGATGAGACATTGCTACAATCAGTTGCGACAGCACTACATGTTTCCGCTCAACCTGTGACTGGTCAGACTGGATCTCGAACTGTTCTTGACAAAAATCCTGGTGTTTTTCTCAATCCAGAGCAGCCCCTTGTGCAGGTACATGTTTGTACATCGCTACCACAAATTGAGGCCGTAACTATTGCGGATGAAGATATCAAACGCCAAGAAGAACGTGTTGCAAGTGCTCGTAAGAAACTTCAAGAAGCTCTCAAGAGAATTGTAGCATAG
- Protein Sequence
- MGTGEDCRLQAPRTEPGQSARSPEPTGAPLEGGSRCCVPSCDCAAFTPSPGSGGRFCCACGHGWLPHAAVPATATVEEVAGAVLAGRQALTIRLKILLDRLLSALTREEALHLLAGFGWTLEDYARGYMLQDKYGKMLQRWQICSDEEEPLVLRRFLGFPETRGLALKLMQPSTGPRSECGSSSENLCAPPFSGDLPVPVNGASYERRPTAQVLSPPPAAAACRAALPGPHASPLYQLQNMQPLDFCKVDRANGERLPQHAVQDEPGLINLSMPKLAEAPKWYREDADHARTSYATSSPSLSRPSPPTSVFSEADKTSRGSSCLADSGDEDDDVENFQSAMNLSRDSSNGARHATEEDHKRLPPSSPKRKWGGSLLDLPFNLATPVVNQVTGKKRVQCNVCLKTFCDKGALKIHFSAVHLREMHKCTVEGCNMMFSSRRSRNRHSANPNPKLHSSGVKRRPPAQEARPSHLQALSLVAASAAAAASPPTTANGGYPAALDSPPTPEACVDLSTHKYEEKTEESWYHNTEAPLDSIHLRSFTNGIVIKAERSDETYGDYDKENDNSPLQYDFSRHLSQSYVDNQKSPQNSQEENHGKEELSDVKIVWRSENTQEENNYKQELSDVRTMSVIEEVRRADSQLPLRGVRKRKSRNPTRYGSCPKRTHLLSLDSIASESGSNECLGDATVDGAFDAGRPDQQISVAVDMQKEEGAVVVEENDGVPDGDVLDTKAVPCSRQLEESAINQEDCVEENCETSVRGVDDNTCPVSCSESVSNMKSDEIVSDGEHVPVDSNIAAKTETEGCTIKEGEGTSDSDANTAVEEETCKDDGLNVQGLEDTPNQSEGQTSTGDSVSSQNESSESSEEHRGAPSREIPIDQENPRRCVECGKVFLNHFCVKTHFRNVHLRLQHACTVAGCAAAFPSKRSRDRHSANHNLHRHLQPAPLRAEPTAAQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -