Lmig000271.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- CG33108
- Assembly
- GCA_026315105.1
- Location
- scaffold189079:24775-148903[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.12 2.5e+03 -2.3 1.5 46 84 128 158 98 206 0.55 2 3 4.1e-112 8.8e-108 360.4 22.6 1 300 281 600 281 600 0.90 3 3 0.0052 1.1e+02 2.1 3.8 120 172 598 650 597 656 0.92
Sequence Information
- Coding Sequence
- ATGTCAGGTGAAGTCTCATGCACTCCCGAAAATTCACCTAGTGACAGTGCTCGTGACTGTATAATGGAAGGCTTGGACAAGTGTGAGGGTAAAAATATTGACTGTGCAGTTGCTGCTGATAGAGCTGTTAAGGCTAACGGCCAGGTGAATGTATCACCAAATGGAGATAAAGAAGATGATAGCGATGCGGTTGACGTAGATAAAAGCCCTGTTCACGTACGGCGCGAGTCTGTATCTCCTGTGGACAGTGAAACTGACCAATTTCAAGATGCGTTTGATTCATTTCATAGTATCACAGATAATACTGATAATATGATGGTTTTAGAAGGTACACCAGGAAACAGTAATTGTGATGCAGAACAGAGCAGTCAGGATAGTAACAATTCTAAAAATGTTGCTGACTCTGAACTCAATGCTGAAGATGGTACTGCAAACGACAGTGAGAGCAGTACAATGAGTGAAGGAGAAACAAGTACTCAAGAATGTGGTGAGAATAAGTGCATACAAGAGCACGAGGGAAAGTTAGTAGAAGAGGGAGTAGAAGTATCAGATGAACATTGTGTGCAAGGAAGCTCTGAAGAACAGTCAGAAAATATTAAAGATGCTATTGATGAGATTAGTAATGAGTGTTGTGATGGTTATGATGAGGGGGAAAATAAACTTGGTATGGCCTGCAAACATTCTAAAGACTTGTCAGAAGCAAGGCAGTTACCATTTGTTGGGGAGAAGGACTCTGCAGTGATAGTGGGACCCAAGTCCGTTATGAAGGAAACCTCTACAACAGAAGATAGTGGTGATGAAGATGGGGTCATGGACTTCCTTGGGAAGAGTAACAATCAAGCAGAGGCACGCCTTGCAGCACGGAGGCAAGCAAGAGCAGAGGCCCGTGAGATCCGCATGCGTGAGCTTGAACGGCAGCAGAAGGAACTTGAAGAAAATGCTGACAAGGTCTACGATATGTACACGGATCCAACATCACGAGCAGCGCGCGTGGCAGCCACTGTTGCATCGGGAAGACTGTCTGCTGGCGCAGGTGGCAGTAGTGGGAGCTATACGTCCAGTCGCAGATCTTCAGAGGACTCTCTGGAGGAAGGCATCAACCTTCGGGATGTTAGGCTGGAGCTGAAAGAGGTGGAAGAAAAGTTTCGGAAAGCTATGGTCCAAAATGCCCAGTTGGACAATGAGAAAGCCTCACTGACGTATCAAGTGGAGCTGTTAAAGGATCGGCTGGAAGACCTAGAAGAACAGCATGCACAGCTGCAGAGAGAACACCGTGATAAATGCAGGGAGCATGACCAGCTTAAAAGAGCAGCAACGAAGCTGAAGGAGGAAGTAGAATGGTTCCGAATTCAGCTTGAGGAAAGAGATCTGCTTATCAAGGAAGCTGGCATGACAATTGTTGGCGATGACCAGGTTTCAAGTGAAGAGGATAGCGGAGGAGAAGGTGGTGGGAGTCCAACTCGACAACAACCCTCCAAACCTCGTAGAGCACTGGTGTCCATTGAATCTGCGGAACTCCTTGGAACAGCTGGAGAAGGCTCCCTTGATGTACGGCTGCGTCGAATAGCAGAAGAACGTAATGAGCTGCTTGATGAGGTGCGTCATCTCAAATTGGAGCTCGAGGAATCGCGCAGCCGTCAACATAAAGTGTCCGGGTTGGGTACAGGTTTGACAAATTCTGTTGCCAGCTTGAATGGACCAGACACTTCGGGTATTGCTGCAGATCTGCAGAGGGAAGCAAATAAACAACTGGGGGACTACAAGTTCAAGTTGCAGAAGGCTGAGCAAGATGTGTCCACACTGCAGGCCAATGTGGCACGACTGGAAAGCCAAGTTATTCGTTACAAAGCAGCATCGGAGTCTGCTGAGAAAGTTGAAGATGAACTGAAGGTGGAAAAGCGGAAATTGCAGAGAGAGTTACGTGAAGCCCAGGCACGGATTGAAGAACTGGAGACGACCAACACGCACCTTCAACGACGCCTCGATAAGCTGAAGAGTGCCAAATCCGCCCTGCTGAAGGAGTTGTGA
- Protein Sequence
- MSGRDDMYFPPPPPPVMPVLLNSIPPINPISACGFITVPVSVIPCGFQHPEQELFEATRLLWERERSEYPPEVICYNHIQPILQDGPKCGLVALSMASTLTRQPLSVEQLFWKAVNRGFSHHGEMFSVDNMAALAAETLQDSCQQVEVLNRGLGHDMTYILGHLAHGAILLVPYDADANHAPCLRRGHKAHWAAVCGAVRLDSSAVYVVARQGKSRRLALWSYEELRLSNENLIELDPDIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -