Lcra011166.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387422.1:126967172-126972518[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0047 86 4.9 0.0 21 45 180 204 176 209 0.90 2 6 0.063 1.1e+03 1.3 0.4 7 45 241 278 238 281 0.79 3 6 0.00045 8.2 8.2 0.7 18 46 278 306 274 314 0.86 4 6 0.0095 1.7e+02 4.0 0.1 23 44 454 475 430 481 0.87 5 6 0.0031 57 5.5 0.0 21 52 572 603 569 605 0.89 6 6 2.2e-05 0.4 12.4 0.2 21 48 628 655 617 658 0.87
Sequence Information
- Coding Sequence
- ATGAATTGCATTGACTATACTGAAGATTCCACAATAAAACATAACTTAACAGAAAATCTAAAAGAAGATAAAAATCATTCAGTATTTCAATGTGATGTATGCAACATGACATTTACCATGAAAAAGCTACTGATTCACCATGTGAAACAACATATCGATAAGAAATGTTCTGATAATATTGATAGCAATGTTCAAGAAATATCTTTTAACAAGGATTCAAAGCATATGAGTAGTACATGTGAATTAAATTGTAAAATATGTGGAAAGTGTAAGATATTTTTTTGTGTAAGTATTTATTTATTTGGTACCAATATTGCCTTGTTCAGACACAACAAATTACACAGGAAAAGGAAGAAACAATCACAAGCTAAACGTTTTACATTCAACTGTAATGAATGTGATCGTGTTTTAACTTCACAACATGCATTAGAAAGTCATAAAAAAACACATTCTGGTGAACGACCATTCAAATGTACTCATTGTGAAAAAGATTTTCCATATCTTGGCAGTCTGATCATACACACAAGGCTTCACACTGGAGAAACACCATACATCTGCTCTGTTTGTAACAAAGGTTACCGTAGCTCTACAAGTCTTAAGAAACATAAAGAAAAACACGTTATTGAACAAGAGCTTAATGAAGATGACAAATTCCAGAAAGCTAACGTATCTACAGATTTACAAAAAGTTAAATGTTCCTTTTGTAACAAGATTCTTAGTAAACATGGTTATGGTACTCATCTAAGGACTCACACAAATAGAAAAAAAATCTTTTGCTGTACTGTCTGTAACAAAATGTTTCAAAAACACTCTCATTTACAGAGGCATGTCAGGATTCATACAGAAAACCCATTTGTATGCAATATTTGTAGTAAAGCTTATAACAACTCTAGTGCCCTTAAGAGGCATATAATTAGATATCATACTGATGAAAAACCTCATATAAAAGATGACTGCTTACCTAAAAACGTCTGTATTTATTGTATTTCGAAACTTAAAGACCTGTCTGCCTTTATTGATGAATGTAAAAATAAAGAACTTCTGTTAACTAAAATATACGAAGAAGAAAATAATCAAAAAAGTAATTCAAATAGAGATTTATCAGATGATGAGTTTTGGGATAAACCGAAAATTTCACGAAATGATGAGAATGAAACATGTATGGTAAAGAAAAAAGAACATGAACCTTTTGAATGTAAACTGTGCAATAAAATATTTTATGGAAAATCATCCTTGGCCAATCACACTCGCATGCATAAATATAAACGAGAACCAAAAAAGTTCCTGTGTAATTATTGTGGTAAAAATTTTATGAAAAGTTCTCATTTGGAAAGACATATCAGAAGTCACACTGGAGTTAAGCCATTTGAATGTGAAAATTGTGGTAAAAGTTTTGTTCAAAGTAATGACCTCAAAAGACATCTACTAACACATACCAGAGAAAAAATATTTCAGTGCAAGCATTGTAATAAAGGGTTCCACCAGAAATCATGTCTTGTTAATCACATCATGACTCACAGTAATGAAAAGAAATTCCCTTGTGACTTTTGTGATAAAAAGTTTACTATGAAAACGTATCTTAACATACATATGAGAATCCACAGAGGGCAGAAATTTGTTTCAAGGAAAAATAATTATTTTTTTCAGTGCACTCATTGTGACAAGCAATTCCACCAAAAGAGTGGTCTTAATAACCACATTCTAACACATACTGGAGAGAAGCCATTCAAATGTACCCAGTGTGATAAAACTTTTATTCAATCAAATCATCTAAAGGAACACCTGAGGATACATAGCGGAGAAAAACCCTATGTTTGTTCTTACTGTGGCAAAAACTTCACTTATGGCAGCACATTAAAAGTTCATTTACGACAACATACAGGCGAAACACCACATATTTGTACATTTTGTGGTAAGGGTTATAGAGATTCAAGTAATTTACGAAGACACACCAATAGGCATCATGTAAATGGTTTGAATAAAAATCCAACTAATCATGAAAATATAGAAAAACGCAGATCTAAACATGAAGTAACTTACAGTGCAGAAAAAGCAGAAGTAGAAGGGTTTAGAAAAAAATGCAGAAATCTTGTACGTGCAAACACAACGAACGTTGACGAATTTTATGAACATCAGGAGAATCGAAGGAAATATTCTTCGATGGTAGAATCGAAATTTCGCAGTAAGCCTATTACTAGTAGAAATTATGATTTCGATGTTTCATTTGATCGTAAGTGGCAATATCTCAAAGAACATTCGATTAGAAAACTCTGA
- Protein Sequence
- MNCIDYTEDSTIKHNLTENLKEDKNHSVFQCDVCNMTFTMKKLLIHHVKQHIDKKCSDNIDSNVQEISFNKDSKHMSSTCELNCKICGKCKIFFCVSIYLFGTNIALFRHNKLHRKRKKQSQAKRFTFNCNECDRVLTSQHALESHKKTHSGERPFKCTHCEKDFPYLGSLIIHTRLHTGETPYICSVCNKGYRSSTSLKKHKEKHVIEQELNEDDKFQKANVSTDLQKVKCSFCNKILSKHGYGTHLRTHTNRKKIFCCTVCNKMFQKHSHLQRHVRIHTENPFVCNICSKAYNNSSALKRHIIRYHTDEKPHIKDDCLPKNVCIYCISKLKDLSAFIDECKNKELLLTKIYEEENNQKSNSNRDLSDDEFWDKPKISRNDENETCMVKKKEHEPFECKLCNKIFYGKSSLANHTRMHKYKREPKKFLCNYCGKNFMKSSHLERHIRSHTGVKPFECENCGKSFVQSNDLKRHLLTHTREKIFQCKHCNKGFHQKSCLVNHIMTHSNEKKFPCDFCDKKFTMKTYLNIHMRIHRGQKFVSRKNNYFFQCTHCDKQFHQKSGLNNHILTHTGEKPFKCTQCDKTFIQSNHLKEHLRIHSGEKPYVCSYCGKNFTYGSTLKVHLRQHTGETPHICTFCGKGYRDSSNLRRHTNRHHVNGLNKNPTNHENIEKRRSKHEVTYSAEKAEVEGFRKKCRNLVRANTTNVDEFYEHQENRRKYSSMVESKFRSKPITSRNYDFDVSFDRKWQYLKEHSIRKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00912432;
- 90% Identity
- iTF_00912432;
- 80% Identity
- iTF_00912432;