Basic Information

Insect: Lochmaea crataegi
Gene Symbol: -
Assembly: GCA_947563755.1
Location: OX387423.1:56891891-56894009[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.23 4.1e+03 -0.5 0.0 26 48 114 136 106 142 0.79

2 18 0.44 8e+03 -1.4 0.0 22 44 138 160 132 164 0.78

3 18 0.0019 34 6.2 0.1 21 44 165 188 159 192 0.83

4 18 0.015 2.8e+02 3.3 0.0 23 48 223 248 219 252 0.84

5 18 0.0015 27 6.6 0.0 17 48 245 276 232 280 0.78

6 18 0.0029 52 5.6 0.1 21 51 277 307 273 310 0.87

7 18 0.12 2.3e+03 0.4 0.1 21 43 305 327 301 332 0.79

8 18 0.16 3e+03 -0.0 0.0 25 45 337 357 328 364 0.79

9 18 0.087 1.6e+03 0.9 0.1 20 43 360 383 353 388 0.73

10 18 0.068 1.2e+03 1.2 0.0 22 42 390 410 386 420 0.80

11 18 0.15 2.6e+03 0.2 0.0 14 43 410 439 400 450 0.74

12 18 0.058 1.1e+03 1.4 0.1 21 47 445 471 431 476 0.83

13 18 0.0048 87 4.9 0.0 20 44 472 496 468 505 0.85

14 18 0.2 3.7e+03 -0.3 0.1 23 47 503 527 497 532 0.77

15 18 0.013 2.4e+02 3.5 0.1 20 45 528 553 521 556 0.89

16 18 0.0015 27 6.5 0.0 21 45 557 581 553 588 0.90

17 18 0.11 2.1e+03 0.5 0.0 22 45 586 609 581 616 0.85

18 18 0.72 1.3e+04 -2.1 0.0 24 43 642 661 638 663 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.23	4.1e+03	-0.5	0.0	26	48	114	136	106	142	0.79
2	18	0.44	8e+03	-1.4	0.0	22	44	138	160	132	164	0.78
3	18	0.0019	34	6.2	0.1	21	44	165	188	159	192	0.83
4	18	0.015	2.8e+02	3.3	0.0	23	48	223	248	219	252	0.84
5	18	0.0015	27	6.6	0.0	17	48	245	276	232	280	0.78
6	18	0.0029	52	5.6	0.1	21	51	277	307	273	310	0.87
7	18	0.12	2.3e+03	0.4	0.1	21	43	305	327	301	332	0.79
8	18	0.16	3e+03	-0.0	0.0	25	45	337	357	328	364	0.79
9	18	0.087	1.6e+03	0.9	0.1	20	43	360	383	353	388	0.73
10	18	0.068	1.2e+03	1.2	0.0	22	42	390	410	386	420	0.80
11	18	0.15	2.6e+03	0.2	0.0	14	43	410	439	400	450	0.74
12	18	0.058	1.1e+03	1.4	0.1	21	47	445	471	431	476	0.83
13	18	0.0048	87	4.9	0.0	20	44	472	496	468	505	0.85
14	18	0.2	3.7e+03	-0.3	0.1	23	47	503	527	497	532	0.77
15	18	0.013	2.4e+02	3.5	0.1	20	45	528	553	521	556	0.89
16	18	0.0015	27	6.5	0.0	21	45	557	581	553	588	0.90
17	18	0.11	2.1e+03	0.5	0.0	22	45	586	609	581	616	0.85
18	18	0.72	1.3e+04	-2.1	0.0	24	43	642	661	638	663	0.77

Sequence Information

Coding Sequence: ATGTTATTTATAGGAAGCTCTGCACAAGGGAAACGAAAGATGTACTGGATCCTACCTGGTGGTATTTTAATTTGCAAGTTGTGTGGGAATTTATACACTAGGAAATTTGAACTATTTTGCCATGTTGCACAACATCTTTACAAGAAGACATATTTTCATAAAGGTCACTCATCCTATCACAGCATGAATCAACAAAAAAATAATGTATTGGAATATCAACCTAAAAATACCAAAGAGATGAACAGAATAGTTCAAATTAAACAAAAATCTACTGACAGATTAGAAGATTCATTAATTCAAACACACAATAATCTAAATAATTCTAAAAATGACCAAtataaatgtgaaatttgtttgaaagtatttacagatgaagatagtttggtgaaacacgcccaaattcacacaggcaaaaaacctttccaatgtaaaatttgccttaaatattttattgattcaggtagtttaaatattcatatgcgttgccatacggacgaaaaaccactccaatgtccaatttgcttaagtttatttaaatataaagatagtttaagtacgcacatgtccactcacacagatgaaaacatattcaaatgtggaatttgttcagaatggtttacagttaaaacaagcttagttagacacatgcttattcatactggcaaagagccattcaaatgtgaaatttgcttgaaattatttagacataagaatggtttagttaagcacatgcgtattcatactggcgagaaaccattcaaatgtgaaatttgcttgaaattgtttagatataagaatagtttagttaagcacatgcgtattcatactggcgagaaaccattcaaatgtgaaatttgcttgaaattatttagacataagtatagtttagttaagcacatgcgtattcatactggcgagaaaccattcaaatgtgaaatttgcttgaaattgtttaaatatagaaattgtttaagtacgcacatgtcttctcacacgggtgaaaacatattcaaatgtgaaatttgttcagaatggtttacagttaaaagaagcttagttagacacatgcgtagtcatactggcgagaaaccattcaaatgtgaaatttgcttgaaattgtttacacttaaagctagtttagctcaacatatgcttattcacacgggcgaaatgccattcaaatgtgaaatttgcttgaaattatttagaaagaagcatagtttagttaagcccatgcgtattcacactggcgagaaaccattcaaatgtgaagtttgcctaaaattctttaaagagaaaagtagtgcaaatcagcacatgcgtgcccacacgggtgaaaaaccattccaatctgaaatttgtttgaaacgtttcttaagtaaacgttatttaaataggcacttgcgcactcattcgagcgaaaaacctttcggatgtgaaatttgttctaaattatttagacataaaaatggtttagatgggcacatgcgcactcatactgacgaaaaacaattccaatgtgaaacttgcttgaaacgttttacaagtaaacgtaatttaattgagcacttgcgcactcataccagcgaaaaaccattcctatgtgaaacttgtttgaaacgttttataagtaaacgtaatttaattgagcacttgcgcactcatacgggcgaaaaaccattcggatgtgaaatttgttcaaaattatttagatataaaaatggtttaggtaggcacttgcgcactcatacgggcgaaaaatcattcggatgtgaaatttgttcaaaattatttaaacataaaaatggtttagataggcacatgcgcactcatactggcgaaaaacaattccaatgtgaagcttgcttgaaacgttttacaagtaaacgtaatttaattgtacgtattcacacaggcgaaaaacgttacaaatgcgaaatttgctttaaatcttttatcgaagcagacacattaaaaaaacacaatgcggagtcacaacggctaaaaaccattcaaatcacattcatattcactcggacaaccaacaatttaaatgcaaaatatgtttga
Protein Sequence: MLFIGSSAQGKRKMYWILPGGILICKLCGNLYTRKFELFCHVAQHLYKKTYFHKGHSSYHSMNQQKNNVLEYQPKNTKEMNRIVQIKQKSTDRLEDSLIQTHNNLNNSKNDQYKCEICLKVFTDEDSLVKHAQIHTGKKPFQCKICLKYFIDSGSLNIHMRCHTDEKPLQCPICLSLFKYKDSLSTHMSTHTDENIFKCGICSEWFTVKTSLVRHMLIHTGKEPFKCEICLKLFRHKNGLVKHMRIHTGEKPFKCEICLKLFRYKNSLVKHMRIHTGEKPFKCEICLKLFRHKYSLVKHMRIHTGEKPFKCEICLKLFKYRNCLSTHMSSHTGENIFKCEICSEWFTVKRSLVRHMRSHTGEKPFKCEICLKLFTLKASLAQHMLIHTGEMPFKCEICLKLFRKKHSLVKPMRIHTGEKPFKCEVCLKFFKEKSSANQHMRAHTGEKPFQSEICLKRFLSKRYLNRHLRTHSSEKPFGCEICSKLFRHKNGLDGHMRTHTDEKQFQCETCLKRFTSKRNLIEHLRTHTSEKPFLCETCLKRFISKRNLIEHLRTHTGEKPFGCEICSKLFRYKNGLGRHLRTHTGEKSFGCEICSKLFKHKNGLDRHMRTHTGEKQFQCEACLKRFTSKRNLIVRIHTGEKRYKCEICFKSFIEADTLKKHNAESQRLKTIQITFIFTRTTNNLNAKYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912431;
90% Identity: iTF_00912431;
80% Identity: iTF_00912431;