Lcra015331.2
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387428.1:21117430-21119239[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0023 0.54 12.3 0.4 1 21 55 75 55 76 0.94 2 15 0.12 29 6.9 0.1 2 20 141 159 140 161 0.93 3 15 4.9 1.1e+03 1.9 1.4 2 23 169 189 168 189 0.85 4 15 6.4 1.5e+03 1.5 0.4 3 20 210 227 210 228 0.81 5 15 0.59 1.4e+02 4.8 0.1 1 23 257 278 257 278 0.86 6 15 6.3e-06 0.0015 20.4 2.4 1 20 284 303 284 305 0.94 7 15 0.0065 1.5 10.9 0.2 3 23 309 330 308 330 0.97 8 15 2.7e-06 0.00063 21.6 3.3 1 23 335 357 335 357 0.99 9 15 1.7e-05 0.0039 19.1 2.2 1 23 363 386 363 386 0.93 10 15 0.29 68 5.7 1.6 1 11 392 402 392 404 0.90 11 15 0.012 2.8 10.1 0.5 1 20 442 461 442 463 0.93 12 15 0.023 5.5 9.2 8.1 1 23 472 494 472 494 0.98 13 15 0.0027 0.63 12.1 4.6 1 23 500 522 500 522 0.98 14 15 2.1e-08 5e-06 28.2 0.3 1 23 528 550 528 550 0.99 15 15 0.00055 0.13 14.3 1.6 1 21 556 576 556 577 0.95
Sequence Information
- Coding Sequence
- ATGCTGCAAATAGCTGCTGGACGGCAATACCTACCAATTCTTCCAAAAGTGAACAATGGATTTACCAAAGTAAATGGTGCTCACCCTATTCATAATAAAAATAATCAGAGTATCATTGATTCTAATAGAACCTCTTCAGAAAATAAATTCTCCACACAAGTCTACACCTGCTCAGACTGTCAATTACCATTTAAAAATTATGAAGAGTATGTAAGTCATCGATTAAAAGTATTGGAAAAACAAAATAAAGAAAGAGAAACCAAAAGTAATCAAAATACTGTTGAGGAAGATATATCTGACATTGAGCTAGTTACAATTGAAAAAGAAGATGATGAGAAGGTTAAGATTGTAGATCACAGCTATTCCAAAACTAATACACCGGATGACAAACCCGAATCAAAAAATACTAATTTAAAATCCAAATGTGTTGTTTGCAATCTTGAATTTGAAACCTTAGATGAATACCTTGCACACAAACAAGAAAACTTCAGAAGTCACACGATACCGTGTAATTTATGCAACAGAAGAATATCGTCGCATAAAATGGAACAACATAAATTACTCCACGCCCAAACTAAATGTCGATTGTCGGAGATGTTGATTGACCCTGAAACTGGAGAACTTGGCTGCAGCGTTTGCGAAACTAAATTCGAATCTCGCCTAAGATATTTACTACATAAAAGATGCAAAAGTAAACAGCTAAAAGCCGAGAAATTGCCACGAATCAAACCGTCAATAAAGAAGCGAACGCCGTCGGTGGTAAAGAAACACCCTTGTCCAATTTGCGAAGTACCATATGCCTCGTCAATATTAAATGATCATATAAATACACACACGCAGGCTCAACCTTACATGTGCGAAATTTGCGGGAAAAAGTTCAGATACAAATCGAACTTTCGTTCACATAAGCACATTTCAGCTTTGTGCGATTTGTGCGGTGCCATTTTGAGCTCGGTCAACGGTTTAAGGAAACATATGAAGATGAAACATTCCAACATGACTTATACTTGTGATAAGTGCCAAAAGATATTCCAAAACAAGGTACATTTGAATGCTCACCTGAGACGACATACTGGCGAAAGGCCTTATTTATGCACAACGTGCGGTAAGACATTCGCTCAATTAACGCATTTGAGGACGCATACGAAAGCGTTACATAATCTAGAAAAGTCTTTTTATTGTTCGAAATGTAATAAAAGATTCGAGAACGGCCAAGAGCACCAGTGCGACGGAAAGTTCGATTCGTACAAAAAATGCCGCATTTGCTACGGTTTTGTCGTGGACATGGAGAAGCATTTGTCGTTACACGACGAAGGTTACGACTATATATGCGGTTTTTGTAATAACACATTCCCCGATAAGCCTAAATTGAAATCGCACAAAAGCTCTCGTGTTTGTAGACGTaaacacgatcacacttgcaatgtgtgttgtaaattgttccattcgaaatcgctgcttaaaatccacatgcgttctcacactggtgaaagaccgtatacgtgcgaagaatgcggcaagcgtttccttcagttcgctcatcttcattatcatttgaaactgcatactggagaaaagcattacgaatgtccttattgtgggaaaaaattcgttttgaacggaaatctcactcaacacattagaatgcatacgggagaaagaccgcacgtgtgcgactattgcTTGAAAGGATTTCCAACTTCGTCGTCTATGAAAAAACATCGGAAGTTTTGTATCATAAAAAAAAAAGGAATTGGTGAGTTTTTTTCAGTCATCTCTTGA
- Protein Sequence
- MLQIAAGRQYLPILPKVNNGFTKVNGAHPIHNKNNQSIIDSNRTSSENKFSTQVYTCSDCQLPFKNYEEYVSHRLKVLEKQNKERETKSNQNTVEEDISDIELVTIEKEDDEKVKIVDHSYSKTNTPDDKPESKNTNLKSKCVVCNLEFETLDEYLAHKQENFRSHTIPCNLCNRRISSHKMEQHKLLHAQTKCRLSEMLIDPETGELGCSVCETKFESRLRYLLHKRCKSKQLKAEKLPRIKPSIKKRTPSVVKKHPCPICEVPYASSILNDHINTHTQAQPYMCEICGKKFRYKSNFRSHKHISALCDLCGAILSSVNGLRKHMKMKHSNMTYTCDKCQKIFQNKVHLNAHLRRHTGERPYLCTTCGKTFAQLTHLRTHTKALHNLEKSFYCSKCNKRFENGQEHQCDGKFDSYKKCRICYGFVVDMEKHLSLHDEGYDYICGFCNNTFPDKPKLKSHKSSRVCRRKHDHTCNVCCKLFHSKSLLKIHMRSHTGERPYTCEECGKRFLQFAHLHYHLKLHTGEKHYECPYCGKKFVLNGNLTQHIRMHTGERPHVCDYCLKGFPTSSSMKKHRKFCIIKKKGIGEFFSVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736068; iTF_00911355;
- 90% Identity
- -
- 80% Identity
- -