Lcap027812.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421403.1:14535166-14538455[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0035 0.73 12.0 0.3 1 21 148 168 148 169 0.94 2 14 0.2 41 6.5 0.2 2 21 232 251 231 258 0.95 3 14 3.5 7.1e+02 2.6 1.9 2 20 300 318 299 319 0.79 4 14 0.63 1.3e+02 5.0 0.1 1 23 348 369 348 369 0.88 5 14 1.9e-05 0.0038 19.2 2.5 1 20 375 394 375 396 0.94 6 14 0.003 0.62 12.3 0.2 3 23 400 421 399 421 0.98 7 14 1.5e-05 0.0031 19.5 3.7 1 23 426 448 426 448 0.98 8 14 2.9e-06 0.0006 21.7 2.0 1 23 454 477 454 477 0.94 9 14 0.84 1.7e+02 4.6 2.2 1 11 483 493 483 495 0.91 10 14 0.0026 0.53 12.5 0.4 1 20 533 552 533 554 0.93 11 14 1.1e-05 0.0023 19.9 3.6 1 23 563 585 563 585 0.99 12 14 0.003 0.62 12.2 5.0 1 23 591 613 591 613 0.98 13 14 2.1e-07 4.2e-05 25.4 1.7 1 23 619 641 619 641 0.99 14 14 6.9e-06 0.0014 20.6 2.0 1 23 647 669 647 669 0.96
Sequence Information
- Coding Sequence
- atgttcgaaaaaatagaaatatttgacGCCGATAATAAGCTTGTAGATGTTATTTCGGAAGAATTGGATAAAAAATGCCGTAGCTGCATTAAAAACGATGGAGTTATAAATTTGCTCACAGCTAAACACAAGGAAGTTTCGTTAAATGAAATGTTTGTTATGTTTTCATTGCCTGCAataAATGTTTCTGATCGATTACCTCAAAAAATTTGTGGATTTTGTGCAAAGACACTGATAGAATTTTATTCTTTCAAATTACAAATAGAGCAGGTACAATTGATGCTGCAAATAGCTGCTGGGCGGCAATCCCTTCCGATTCTTCCAAAAGTGAACAATGGATTGACCAAAGTAAATGGTGTTCACCCTAtccataataaaaataatgacagtATCATTCAATCTAACAGAACCTCTTCAGAAAATACATTTTCCACACAAGTCTACACCTGTTCAGACTGTCAATTACCATTTAAAAATTATGAAGAGTATGTAAGTCATCGAATAAAAGTattggaaaaacaaaataaagaaaaagaaaccaAAAGTGATCAAAATACTGTCAAAGAAGATATATCTGACATTGAATTAGTTACAATTGAAATAGAAGATGATAAGGTTAAGAGTGAAGATCACAGCTACTCCAAAACACCAGATGACAAACCTAAATCCAAAAATACTACTAATTTAAAATCCAAATGTGTTGTTTGTGATCTTGAATTTGAAACCATAGATGAATACCTTGCGCACAAACGAGAAAACTTCAGAAGACACACAATACTGTGTAACTTATGCAACAAAAGAATATCATCGCATAAAATGGAACAACATAAATTACTCCACGCCCAAACTAAATGTCGATTGTCCGAGATGTTGATTGACCCCGAAACTGGCGAACTTTGCTGCAGCGTTTGCAAAACTACATTCGATTCTCGCTTAAGATATTTACTACATAAAAGATGCAAAAGTAAACAGCTAAAAGTCGAGAAATTGCCACGAATCAAATCGTCAATAAAGAAGAGAACACCGTCGGTGGTAAAGAAACACCCTTGTCCAATTTGCGAAGTACCATATGCCTCGTCAATATTAAAAGATCATATAAATACTCACACGCAGGCGCAACCTTATATGTGTGAAATTTGCGGTAAAAAGTTCAGATTCAAATCGAACTTTCGTTCACATAAGCACATTTCTGCTTTATGCGATGTGTGCGGTGCCATTTTGAGCTCGACCAACGGTTTAAGAAAACATATGAAGATGAAACATTCCAACATGACTTATTCTTGCGATAAGTGCAAAAAGATATTCCAAAACAAGGTACATTTGAATGCTCACCTGAAACGACACACGGGCGAAAGGCCTTATTTATGTACAACGTGCGGTAAGACATTCGCCCAATTAACTCATTTGAGGACGCATATGAAAGCGTTACATAGTGGAGAAACGTCTTTTTATTGTTCGAAATGTAATAAAAGATTCGAGAAGGGCCAAGACCACCAGTGCAACGGACAGTTcgatttgtacaaaaaatgccGCATTTGCTACGGTTTCGTCGTGGACTTGGAGAAGCATTCGTCGCTGCACAACGAGGGCTACGACTACATATGTGGTTTTTGTAATAACATATTCCCCGATAAGTCTCAATTGAAATCTCACAAAAGCTCTCGAGTTTGTAGACATAAACCCGAATACACTTGCAATGTGTGTTCTAAACTGTTCCATTCAAAATCTCTGCTTAAAATCCACATGCGGTCTCACACCGGCGAAAGGCCATATAAGTGTGAAGAATGCGGGAAGCGTTTTCTTCAGTTCGCTCATCTTCATTATCATTTGAAATTACATACTGGAGAAAAGCAATACGAATGTACTCATTGTGGGAAAAGATTCGCCTTGAACGGAAATCTCACTCAACACCTTAGAATGCATACGGGAGAAAGACCGCACATGTGCGATTATTGTTGGAAAGGATTTCCAACTTCGTCCTCATTGAAAAAACATCGGTCGATTCActtaaaatttaattcataG
- Protein Sequence
- MFEKIEIFDADNKLVDVISEELDKKCRSCIKNDGVINLLTAKHKEVSLNEMFVMFSLPAINVSDRLPQKICGFCAKTLIEFYSFKLQIEQVQLMLQIAAGRQSLPILPKVNNGLTKVNGVHPIHNKNNDSIIQSNRTSSENTFSTQVYTCSDCQLPFKNYEEYVSHRIKVLEKQNKEKETKSDQNTVKEDISDIELVTIEIEDDKVKSEDHSYSKTPDDKPKSKNTTNLKSKCVVCDLEFETIDEYLAHKRENFRRHTILCNLCNKRISSHKMEQHKLLHAQTKCRLSEMLIDPETGELCCSVCKTTFDSRLRYLLHKRCKSKQLKVEKLPRIKSSIKKRTPSVVKKHPCPICEVPYASSILKDHINTHTQAQPYMCEICGKKFRFKSNFRSHKHISALCDVCGAILSSTNGLRKHMKMKHSNMTYSCDKCKKIFQNKVHLNAHLKRHTGERPYLCTTCGKTFAQLTHLRTHMKALHSGETSFYCSKCNKRFEKGQDHQCNGQFDLYKKCRICYGFVVDLEKHSSLHNEGYDYICGFCNNIFPDKSQLKSHKSSRVCRHKPEYTCNVCSKLFHSKSLLKIHMRSHTGERPYKCEECGKRFLQFAHLHYHLKLHTGEKQYECTHCGKRFALNGNLTQHLRMHTGERPHMCDYCWKGFPTSSSLKKHRSIHLKFNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00912495;
- 90% Identity
- -
- 80% Identity
- -