Lcra018001.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387425.1:14755413-14757495[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0067 1.6 10.9 1.3 2 21 7 27 6 28 0.88 2 14 0.019 4.5 9.5 0.0 3 21 35 53 33 54 0.92 3 14 0.14 33 6.7 4.5 1 20 252 271 252 273 0.92 4 14 0.0004 0.093 14.8 2.2 1 23 281 303 281 303 0.97 5 14 0.00082 0.19 13.8 2.7 3 23 323 343 321 343 0.96 6 14 0.051 12 8.1 2.1 1 23 364 385 364 385 0.93 7 14 1.2e-05 0.0028 19.5 0.8 1 23 390 412 390 412 0.97 8 14 0.00019 0.043 15.8 1.0 1 20 418 437 418 439 0.94 9 14 1.3e-05 0.003 19.4 2.3 1 23 446 468 446 468 0.98 10 14 1.7e-06 0.00041 22.2 3.5 1 23 474 496 474 496 0.97 11 14 7.2e-05 0.017 17.1 6.1 1 23 502 524 502 524 0.98 12 14 2.3e-06 0.00053 21.8 1.3 1 23 530 552 530 552 0.98 13 14 1.5e-05 0.0035 19.3 0.1 1 23 556 578 556 578 0.98 14 14 0.00022 0.052 15.5 0.2 1 23 586 609 586 609 0.96
Sequence Information
- Coding Sequence
- ATGGGTACATTATCCTTGAAATGTCCTTTATGTTGTGGTAAACATTTTTCATCTCGCCAGTTGTTAAAGGACCATATTCTTGAACTCATAAACAATCTAGCATGTCCAATTTGTAATGCAGGATTTAATAGTATTACTGAATTAAGTACTCACTTGGAAACAGAATGTGACAGTAATTTGACAAATGTAGTTGGGAACAAGGAAAATCAAAACATAACCGAAATCGATAATCAAATTGAGGGAGCCGATGTAGTTTCTGAGGAGGAAATTCATAAAACTGATCCAAAACATCAAGTTAATCAGGATCCAGAAAATGGTGCTCTTGAAGAGAACTTGAATGCTGCTACTGAAGGTGATAATAATGAAGTATCTTACATGTGTATCATGTGTAACGTTCACTTCACATCTATTGACGAGCACTTGGCTAAATATCATGATGGGGAAGAAGTTCTTTTGGAATCTGAGGAGTTTCAACAAGCTGGTGGAGAAGCATTAGAAGAAAACCAGTCTGTAAATTGTGAACAAGAAGACAATTTTGAATTGTCTAACAATTCTGTTGATGAAAATGAGCAGTATATGGTTGAGGAAGAAAATGAGGATCATGATGATGAAACAAAGGATCTTGATTGGTCAATACAGAATATTAACATTGCTCCTTTGACTGAAAATTATGCCATAGAAAATGGAAAAGTAAAAAAAATCACTGAAGAAGAGGCTGCCGAAATCAGTGATCATAATTCGATAATTCAAATCCATCAGTGTCCCAAATGTTATATGCAATTTCCCAAACTTGATCATTATATTAAACACAATTGTACCCCTGGTAAAATACAAAAAAGACACAAATGTGTTCATTGTTCCGCCGTATTTGAGAGTAGTGAGTCTCTTAATACCCATTTAAATTTGCATATAAAGCCAGACACTGATGCCTCGCCAACTAAGGTGATCACTCTAGCTCCCCACCTGTGTGACATTTGCAACACCATGTTTCCCTCATTCAAGAGTCTACGGTTGCACAAAAGAATGCATGAACCTGTAAAACGCAAAGAAATTACACCACAAAGTGATGATCCTGATAGTTCGCCCATGTTCACTTGTCACGTTTGTGGCGAAACTTACGACCTCAAGTTTCAAAAAATTCATATGGATTCTCATAATAAAGACAATTTCTATTGTACTACTTGCAACCGAGAGTTTGTTACCCAAGAAAATCTGGATATGCACATGAAAGCTCATAGTAATTCTAAAAAATTTACTTGTTCTTATTGCAAAAAAGCTTTCACCACTTATGGCGCTCTGCACGATCATGTGAGTAATCAGTGCCAAAACAGGCATTATGAATGCCAGTATTGTGGAAGACGGTTTTCCCGACCACATGAGAAAGTGAAACATGAAAGAATCCACACCGGTGAAAAACCCCATATTTGCCAAATCTGTGGAAAGGCGTTCAGAGTGAGTTATTGCCTTACTCTGCATATGCGTACTCATTCTGGTACAAGACCTTACGAATGTCCACACTGCGATAAACGCTTTAAGTCTCATAGTGTCTACAACCATCACTTACTTATACATTCAGATGTGAGAGCATATAAATGTTCTTACTGTCCAAAAACTTTTAAAACCAGCGTGCAGTTGGCCGGCCACAAAAACAGCCACATTAAACCTTTCAGTTGCACAGAATGCAATAGACCATTTGCCTCTCTGTATGCTGTTAGAGCACATATGGAAACCCATAAGAGGGAAAACAATTTAAAATTTGATTGTTGGCTTTGTGGTGCAACTTATGCTAGGGAATTCGCACTCAAAGACCACATGAAGAGTCAACATGCTGGAGAAGAAGTTTTCGTTGAAATGAAAACAGATGAAAATAATTTTTTAAAAGAAGAAGAAAGCGCTACTGAGCAAATACTAGAATAG
- Protein Sequence
- MGTLSLKCPLCCGKHFSSRQLLKDHILELINNLACPICNAGFNSITELSTHLETECDSNLTNVVGNKENQNITEIDNQIEGADVVSEEEIHKTDPKHQVNQDPENGALEENLNAATEGDNNEVSYMCIMCNVHFTSIDEHLAKYHDGEEVLLESEEFQQAGGEALEENQSVNCEQEDNFELSNNSVDENEQYMVEEENEDHDDETKDLDWSIQNINIAPLTENYAIENGKVKKITEEEAAEISDHNSIIQIHQCPKCYMQFPKLDHYIKHNCTPGKIQKRHKCVHCSAVFESSESLNTHLNLHIKPDTDASPTKVITLAPHLCDICNTMFPSFKSLRLHKRMHEPVKRKEITPQSDDPDSSPMFTCHVCGETYDLKFQKIHMDSHNKDNFYCTTCNREFVTQENLDMHMKAHSNSKKFTCSYCKKAFTTYGALHDHVSNQCQNRHYECQYCGRRFSRPHEKVKHERIHTGEKPHICQICGKAFRVSYCLTLHMRTHSGTRPYECPHCDKRFKSHSVYNHHLLIHSDVRAYKCSYCPKTFKTSVQLAGHKNSHIKPFSCTECNRPFASLYAVRAHMETHKRENNLKFDCWLCGATYAREFALKDHMKSQHAGEEVFVEMKTDENNFLKEEESATEQILE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736047; iTF_00911327;
- 90% Identity
- -
- 80% Identity
- -