Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421398.1:22525586-22527698[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0078 1.6 10.9 1.2 2 21 7 27 6 28 0.88

2 14 0.047 9.6 8.5 0.0 3 21 35 53 33 54 0.92

3 14 0.24 49 6.3 4.6 1 20 250 269 250 271 0.92

4 14 0.00095 0.19 13.8 3.0 1 23 279 301 279 301 0.97

5 14 0.001 0.21 13.7 2.7 3 23 321 341 319 341 0.96

6 14 0.058 12 8.2 1.6 1 23 366 387 366 387 0.93

7 14 0.0017 0.36 13.0 1.4 1 23 393 415 393 415 0.97

8 14 0.00037 0.077 15.1 1.1 1 20 421 440 421 442 0.94

9 14 1.6e-05 0.0033 19.4 2.3 1 23 449 471 449 471 0.98

10 14 2.1e-06 0.00044 22.2 3.5 1 23 477 499 477 499 0.97

11 14 0.00019 0.039 16.0 6.7 1 23 505 527 505 527 0.98

12 14 2.8e-06 0.00057 21.8 1.3 1 23 533 555 533 555 0.98

13 14 1.8e-05 0.0037 19.2 0.1 1 23 559 581 559 581 0.98

14 14 0.00015 0.03 16.4 0.1 1 23 589 612 589 612 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0078	1.6	10.9	1.2	2	21	7	27	6	28	0.88
2	14	0.047	9.6	8.5	0.0	3	21	35	53	33	54	0.92
3	14	0.24	49	6.3	4.6	1	20	250	269	250	271	0.92
4	14	0.00095	0.19	13.8	3.0	1	23	279	301	279	301	0.97
5	14	0.001	0.21	13.7	2.7	3	23	321	341	319	341	0.96
6	14	0.058	12	8.2	1.6	1	23	366	387	366	387	0.93
7	14	0.0017	0.36	13.0	1.4	1	23	393	415	393	415	0.97
8	14	0.00037	0.077	15.1	1.1	1	20	421	440	421	442	0.94
9	14	1.6e-05	0.0033	19.4	2.3	1	23	449	471	449	471	0.98
10	14	2.1e-06	0.00044	22.2	3.5	1	23	477	499	477	499	0.97
11	14	0.00019	0.039	16.0	6.7	1	23	505	527	505	527	0.98
12	14	2.8e-06	0.00057	21.8	1.3	1	23	533	555	533	555	0.98
13	14	1.8e-05	0.0037	19.2	0.1	1	23	559	581	559	581	0.98
14	14	0.00015	0.03	16.4	0.1	1	23	589	612	589	612	0.96

Sequence Information

Coding Sequence: atggGTACATTATCCTTGAAATGTCCTTTATGTTGtggtaaacatttttcatcTCGCCAGTTGTTAAAGGACCATATTCTTGGACTGATAAACAACCTAGCATGTTCAATTTGTAATGCAGGATTTAATAGTATTACTGAATTAAGTGCTCACTTGGAAACAGAGTGTGACAGTAATTTGACCAATGAAGATGGGAAGAAGGAAAATCAAAACATACCTGAAATCGATAAACAAATTGTACTTTCTgaggaagaaattcataaaactgATCCAAAATATCAAGTTAAACAGGATCCAGAAAATGGTTCTATTGAAGAGGACTTGAATACTGCTACTGATGGTGGTAATACTGAAGTAACTTACATGTGTATCATGTGTAACGTTCAATTTACATCTATTGAAGATCATTTGGCTAAATATCATGATGGGGAAGAAGTTGTTTTGgaAACTGAGGAGATTGAACAAGACGGTGGAGAAGCATTAGAAGAAAACCAGTCTGTGAATTGTGATCAAGaaaacaattttgaattatCTAACAGTTCtgttaatgaaaatgagcaaTATATGGTTGAGGAAGTAAATGAGGATGATGATAATGATGAGGAAACAAAGGACCTCCATTGGTCAATACAGAACATTAACATCGCTCCTTTGACCGAAAATTATGCTATAGAAAatggaaaagtgaaaaaaatcacTGAAGAAGAGGCTGCTGAAATCAGTGATCATAATTCAATCATTCAAATCCATCAGTGTCCCAAATGCTATTTGCAATTTCCCAAACTTGATCATTATATTAAACACAATTGTACCCCTGGTAAGATACGAAAAAGACACAAATGTGTTCATTGTTCTGCAGTATTTGAGAGTAATGACTCTCTTAATActcatttaaattttcatacaAAGCCAGATACTGATGCTTCGCCAAGTAGGGTGATCACTCTAGCTCCCCACCTGTGTGACATTTGCAATACTATGTTTCCCTCATTCAAGAGTCTACGGCTGCACAAAAGGATGCATGAACCCATAAAACGTAAAGAAATTACACCACAACGTGCTGATCCCGAGGCTGATCCTGACAGTCGTCCCATGTTTACTTGTCACGTGTGTGGCGAAACTTATGACcttgagtttaaaaaaattcatatggaTTCTCATTCTGATAAAGACAATTTCTATTGTACTACCTGCAACCGACAGTTTCTTACCCAAGAAAATCTGGATATGCACATGAAGGCTCATAGTAATTCTAAAAAATTTACATGTTCTTATTGCAAGAAAGCTTTCACCACTTATGGTGGTCTACATGATCATGTGAGTAATCAGTGCCAAAACAGGCATTATGAATGCCAGTATTGTGGAAGACGGTTTTCCAGACCACATGAGAAAGTGAAACATGAAAGAATCCACACTGGTGAAAAACCCCATATTTGTCAAATCTGTGGAAAGGCATTCAGAGTGAGTTATTGCCTTACTCTGCATATGCGTACTCATTCTGGTACAAGACCATATGAATGTCCACACTGCAATAAACGCTTCAAGTCTCATAGTGTCTACAACCATCATTTACTTATACATTCAGATGTGAGAGCATATAAATGTTCTTACTGtccaaaaacttttaaaaccAGTGTGCAGTTGGCCGGTCACAAAAACAGCCATATTAAACCTTTCAGTTGTACAGAATGCAACAGACCTTTTGCATCTCTGTATGCAGTTAGAGCACATATGGAAACCCATAAGAgggaaaacaatttaaaattcgaTTGTTGGCTCTGTGGAGCAACTTATGCTAGAGCATTTGCACTTAAGGACCACATGAAAAGTCAACATGCTGGAGAAGAGGTTTTAGTTGAAATGCAAACTGAGGAAActgatgaaaataattttttaaaggaaGAAGAAAGTGCTACTGAACAAATACTAGAATAG
Protein Sequence: MGTLSLKCPLCCGKHFSSRQLLKDHILGLINNLACSICNAGFNSITELSAHLETECDSNLTNEDGKKENQNIPEIDKQIVLSEEEIHKTDPKYQVKQDPENGSIEEDLNTATDGGNTEVTYMCIMCNVQFTSIEDHLAKYHDGEEVVLETEEIEQDGGEALEENQSVNCDQENNFELSNSSVNENEQYMVEEVNEDDDNDEETKDLHWSIQNINIAPLTENYAIENGKVKKITEEEAAEISDHNSIIQIHQCPKCYLQFPKLDHYIKHNCTPGKIRKRHKCVHCSAVFESNDSLNTHLNFHTKPDTDASPSRVITLAPHLCDICNTMFPSFKSLRLHKRMHEPIKRKEITPQRADPEADPDSRPMFTCHVCGETYDLEFKKIHMDSHSDKDNFYCTTCNRQFLTQENLDMHMKAHSNSKKFTCSYCKKAFTTYGGLHDHVSNQCQNRHYECQYCGRRFSRPHEKVKHERIHTGEKPHICQICGKAFRVSYCLTLHMRTHSGTRPYECPHCNKRFKSHSVYNHHLLIHSDVRAYKCSYCPKTFKTSVQLAGHKNSHIKPFSCTECNRPFASLYAVRAHMETHKRENNLKFDCWLCGATYARAFALKDHMKSQHAGEEVLVEMQTEETDENNFLKEEESATEQILE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912441;
90% Identity: iTF_00736047;
80% Identity: -