Lcra031533.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387423.1:76239520-76241840[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-16 4.2e-12 47.1 0.1 8 75 54 120 49 122 0.93 2 2 1.7 2.3e+04 -3.4 0.0 39 45 184 190 177 192 0.78
Sequence Information
- Coding Sequence
- ATGTGGTTTATTTTTACTTATAATAAAGGTCATATATTTCCTGGAAAATATACATATATTATTCATTGCTCATATTGTAGTTGGTACAAAGGAAAACCGGTTGGAATAGAGGCAACACTTCAAACTCAAGATGGTCCAAAAGTGTCTTACATCGTCCCAGATCCTAGGATTCCTCCTGGATGGAACAAACATATCTTAAGAAGAACAAAAGGTTGTGATGCTGGTAAATGGGATACAATCATTGTCAGTCCTGAAAATAAACGATTTAGATCAAAGGCAGACATTATGAAATACATGGAAGAACATCCAAATGACAATCTGAATGAAAACATGTTTGATTTTTCATTTGTTATGAGAAGAAAACGGAAGCATGCAGCTGTTCTAACTCCAGCAAAATCTCCTGAAAAGGAAAAACCTCCACCTGTGGTTGCACCAATAGAACCAGTTGAACAACCAGAAGTAAATATCAAAGAAGAGAAAGATGAAGACGATTCAAATTCCCTAAAAATTCTCTTTGAAGATGATGCTTACAAATGTCCCATAGAAGGATGTGGAAAAACTTTCAGAAGAGAAAATTTAGCTCAAATGCATGTAAAACATTATCATCCTGAATATACCAAGTTTCTGGATTCAACTCCAAATGTTGCTGATTTAGCATATGCAAGAACAGTTGGCGAAAATCTAGATAGATCTCCAGGTAATTTTTGGTTTGCTAATTTTTCCACAAATGTATATTATCAACACGCAGTCGAGAAGGAAGAGGAAGAAGAACAAGAACAACAGGAGGAGGAAGAAGAAAAACAAGAGGGGGAATATGAATTAAATAAACATACTAAAATTAAGAACAAATCTATTCATCACCAAAATAACTATTTGTCATCAAACAAAATCCTCTGA
- Protein Sequence
- MWFIFTYNKGHIFPGKYTYIIHCSYCSWYKGKPVGIEATLQTQDGPKVSYIVPDPRIPPGWNKHILRRTKGCDAGKWDTIIVSPENKRFRSKADIMKYMEEHPNDNLNENMFDFSFVMRRKRKHAAVLTPAKSPEKEKPPPVVAPIEPVEQPEVNIKEEKDEDDSNSLKILFEDDAYKCPIEGCGKTFRRENLAQMHVKHYHPEYTKFLDSTPNVADLAYARTVGENLDRSPGNFWFANFSTNVYYQHAVEKEEEEEQEQQEEEEEKQEGEYELNKHTKIKNKSIHHQNNYLSSNKIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -