Lcra024342.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- baz-2
- Assembly
- GCA_947563755.1
- Location
- OX387426.1:52027434-52029374[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-16 2.9e-12 47.6 0.0 5 74 365 435 362 438 0.89 2 2 0.24 3.2e+03 -0.6 0.0 52 73 456 475 454 478 0.81
Sequence Information
- Coding Sequence
- ATGTTTTATCATTTTTTTTTGTATTTTCGTAATGCATGTATTGTTTTGTTTAGTGATCCTAATTCTATTTTGAGTGGTGTTAGATTACCGCCAGATACTGAGATCATTAAATACACTTCCTCTATCGTCGGTCCAAAAATTCCCGGTACAACCAATAGAGGCAGAAAGAAAACCATCAGCTTAGATCCGCCGTTCGTCAGTCTACACCCCTCACCGATCTGCGGATTCATGGAAGGCATGCACAAAAGAAGTAGTTCAAATGGTCAAGACATAACACCACCGACAACTCCTCCAGGTGATAAATCGGAAGGTTTAAAATTAGGTACAAACGGAAATACATCCGATCTAACTAATTATGAAGCTTCCGAATCAACCGGTGAATGTCCTTTAAATTTATCCTTCAAACCAACTGCAGATATTCTAAACGCCAGTTTTCCTTTAGCTTCTTTGAGTAATATCTCCTCTAACGTGGGATCCGACAGGATTTCTCGTAGAAAACCCGGTCCAAAACCGAGACGTATAATATCATCATCAGGAAGCCAGTTATCTCCATCACCTTCTAGCAATCTTTTTTCCCACATTTTCTCACCGGTAGATTCACCCAGACCGCCTAGTCGAAACGAAGGTTCTGACGGTGGAAGTTCTACTTCTTCTACGTGTACTACCACCGCTGCTACTACCATTACCAACACTCCAGTGTCTCCCGTTTTAAATTACAGCCACAAGGAAGGAAGACCTAGAAATTTGGGTAGGGGTATCAGTAAACCTAAGAAGAATACGGTGGCTTCCTTGTTGGCGCAAAGTAGAGCTTTAGGAATAAAACCGGTACCGATGCTGGATCCAAATACTTCCATCAATCAACAGATGAATATATTAAAGTCTAATATTATGGCGGCTCAACAATATCTCTCGGAATCTGGTGGAGATGAACAAGCTTTGAATAGATTGTTGCAGGAAAAAATCAAAGGTACGCTCAGTGATTCCAGTACGGTAGAAGCAACTTCGGATTCGGATAATTTAACCGATTCCAATCACACGGACTCCGAAATGGAAGTGGAGGTCGTAGCGAAAAAGCAAAAACATTACGACGAACGCTTGTTGAGGATCCCTTTGGGAAAAGGATGGAAAAGGGAGACTATAATCAGAGGTTTGTCGAAAAATGGGTTTTTAAAGGGAGACGTGACGTATGTGGCACCGGAATCGTCTAATAAATTCAAACAAATGTCCGACATTACGCAGTATTTGGAATATCAAAAATGTCCGGATTTATCGAAAGAAAATTTCACTTTTAGCTGTAAAGTTATAATAGGCGATTATCTTCAACCGGTACCCACTGAACTTCAAGTCGACGGAACTGAATTTATATATTTATCCGAGGAAGACATGAATAGAAGATTGGATGAATTTAGTTTTTCGATGAGACCGAGTATACCAGTCGAACAAAGAATTGAAATGGCTAGAAAGCAACAAGCTGCAAGAGAAGCTGCTAGACAAGATAAACAAGAAAAAGAACAGATCAAAATAATACAAGAAAACGAAATCATGGAAAAACAAGAATACGTGAAAATCGAAAAAGAGCCGAAATATCCGCAGATGTTGGAGGTATGA
- Protein Sequence
- MFYHFFLYFRNACIVLFSDPNSILSGVRLPPDTEIIKYTSSIVGPKIPGTTNRGRKKTISLDPPFVSLHPSPICGFMEGMHKRSSSNGQDITPPTTPPGDKSEGLKLGTNGNTSDLTNYEASESTGECPLNLSFKPTADILNASFPLASLSNISSNVGSDRISRRKPGPKPRRIISSSGSQLSPSPSSNLFSHIFSPVDSPRPPSRNEGSDGGSSTSSTCTTTAATTITNTPVSPVLNYSHKEGRPRNLGRGISKPKKNTVASLLAQSRALGIKPVPMLDPNTSINQQMNILKSNIMAAQQYLSESGGDEQALNRLLQEKIKGTLSDSSTVEATSDSDNLTDSNHTDSEMEVEVVAKKQKHYDERLLRIPLGKGWKRETIIRGLSKNGFLKGDVTYVAPESSNKFKQMSDITQYLEYQKCPDLSKENFTFSCKVIIGDYLQPVPTELQVDGTEFIYLSEEDMNRRLDEFSFSMRPSIPVEQRIEMARKQQAAREAARQDKQEKEQIKIIQENEIMEKQEYVKIEKEPKYPQMLEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911951;
- 90% Identity
- -
- 80% Identity
- -