Lcra036329.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- clz9
- Assembly
- GCA_947563755.1
- Location
- OX387429.1:29247810-29249672[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-08 1.4e-05 26.3 0.0 2 44 17 59 16 60 0.90
Sequence Information
- Coding Sequence
- ATGCCTCGTCAAAAGTATACACGCAAAACTTCTCGCGCCTCATGGTCTGAAAAGGATATGGAACGTGCGCTTAAGACAATAAATGACAAAGTTGCTTCCATACGAAAAACTGCACAAATATTTAATATTCCATATGGAACATTACAAGACCGTTTAAATGGTCGCTTCGCTACAAAAAAGTACAAACTGGGCAGAAAATCTGTCTTTACTGTTCAGCAAGAAGAAGACCTCGCAAAACATGTAATAAAGCTCTCTCACCTTTTTTATGGACTAACAGCTACGTCCATAAGACAACTTGCATTTGAATTTGCACAAACGAATAAAATAAAAAACACTTTTAACAAAGAGAAGAAAATGTGCGGAAAAGATTGGTTCTATGCCTTTATGCGGCGCAACCCGACATTGAGCTGCCGTAAACCGGAAGCCACAAGTCTGAGCCGTGTGTTGGCATTCAATAAAGAGGAAGTTACGATCTTTTATGATAATTTAGATAAGCTCTACTCTGAGCACACGTTTGAAGTTCATCGCATCTTCAATGTAGACGAAACAGGGATCAgttcgtttgttccgccaatgtttatttttaaacgagaaagaatgaaggaagctctagaaagaaacgggccaactggtgctgtatataggtgctctaagtctggatggatcactgaggagattttcacagactggattcaacattttgcaaaatttacaaaagctagtaaagatgatccgatcctgttattaatggataaccactcaactcattcaactttaaggacatatcattattgcagagataatggtattaaagttgtttcaagtccgccccacacttcacaccggttgcagccgctcgatgtgggtttctttggaccactaaagagtgtatacaatcaagaatgcgatagatatatcaaagctaaaaaccacgagaagattctgcaaacggatatcgcagagTTATTTAAATCTGCTTTTAATAGAGCGGCAGCTGTAGAGAAAGGGGTCAAGGCTTTCGAAACTACTGGCATTTATCCATTTAACCGATTCGTGTTCAGTGATGAAGAGTTCAGCACCTTACTGGTCGATCCAGCACCAACTGCTGAGCAGAATCAAAAACCGAGTATTGTTGAAACCAATACAATAACACGGTTGGAGAAAACACCATCTCCTATACCTGGACCATCTACATTCACTGTTCAACAACCATCTCTATTAAAAGCACCGTCGCCTATCGCTGGACCATCTAAGACAAAACGTCACCACATACCTTCCTTTAGTAGTGAATCTTCAGAATTAGAGCTTGAAGAAATTGTAGACGATGAATTGACCGACGATGATGATCCGACAGTTCAGCTACCCGTGGAAAATAAAAGCTTTGCAGAACTTCTACCCTTGCCAACAGTGACAACTAGAAACAAATCACGAAAAGCCAAGCATTCCCAGATACTGACCTCAACGCCATTGAAAGATGAATTGGAAAAAAAAGAAGAGAAGAAGCAACAAAAACTGAATAAGCTAGAAAAACAAAAAGATGTTAAACAGGAGAAGCTGACAAAAGCTTCACGACGTATCGTTTCCGAAAAGAAGGATAATTCTACAAATGCTGACATATGTTCTGTTTGTCAAGATTTTGGAAAATCCAATGAAATATGGTGGAGATGCCGTTCGTGTGCTGTGTGGACGCATGCAGATTGTACAATAATTGAAAATGCTAAAGATTATGTTTGTAGTAAATGTTAA
- Protein Sequence
- MPRQKYTRKTSRASWSEKDMERALKTINDKVASIRKTAQIFNIPYGTLQDRLNGRFATKKYKLGRKSVFTVQQEEDLAKHVIKLSHLFYGLTATSIRQLAFEFAQTNKIKNTFNKEKKMCGKDWFYAFMRRNPTLSCRKPEATSLSRVLAFNKEEVTIFYDNLDKLYSEHTFEVHRIFNVDETGISSFVPPMFIFKRERMKEALERNGPTGAVYRCSKSGWITEEIFTDWIQHFAKFTKASKDDPILLLMDNHSTHSTLRTYHYCRDNGIKVVSSPPHTSHRLQPLDVGFFGPLKSVYNQECDRYIKAKNHEKILQTDIAELFKSAFNRAAAVEKGVKAFETTGIYPFNRFVFSDEEFSTLLVDPAPTAEQNQKPSIVETNTITRLEKTPSPIPGPSTFTVQQPSLLKAPSPIAGPSKTKRHHIPSFSSESSELELEEIVDDELTDDDDPTVQLPVENKSFAELLPLPTVTTRNKSRKAKHSQILTSTPLKDELEKKEEKKQQKLNKLEKQKDVKQEKLTKASRRIVSEKKDNSTNADICSVCQDFGKSNEIWWRCRSCAVWTHADCTIIENAKDYVCSKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00329264;
- 90% Identity
- -
- 80% Identity
- -