Lcra006703.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- At3g55350
- Assembly
- GCA_947563755.1
- Location
- OX387422.1:62953340-62955391[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-09 4.8e-07 30.9 0.0 1 39 27 66 27 71 0.89
Sequence Information
- Coding Sequence
- ATGTCGGGTCACGGGAAAGAGGTCAAAAAGAAATCCAAATCAAAGGACAAAGTCCTCAAGAGGAAATTATTCACATACTCCGAAGAATCATTGAAGGAAGCTCTTAACCATATCCGATTAGGTGAAATTTCAATAAGAGAGGCTACTAGGCGGTTCAGGGTGCCAAGAGCTACTCTGCAAGATAGATTACATAGCAGACGTGGTGATGCTGTCCAGAAAACGGGTCCACAGCCGATAATGGGTGTCGATGGCGAAAAAATAAGGATAGCAGAATGGGCTATTAACATTGCTAAGTCCGGTCGAGCCTTAATAACCGAGGAAATTATAAGAGCATGGTTCAGAGACCTAAACGAATTTCTTGAAAACAATAACTTACAAGAAATAGTTAAACATCCTCAAAGAATATTTAACGGCGATGAAGCCGGTTTCGCATTTATTTACTGGTTAATGCTGTTAACATATTTTTGTAGATCAGTTGGAGAAAGGTTCAATCTAGGAAAATCGTCCCTGTCGAAGTGCTTTATGAGAATTATCAAGCTTTTAAACCACCTTGCACCAACCATCATAAAATGGCCTTCACAACATGACCGAACACAAATTAAAGAAGCTTTCTTGAGAATGGGGAGTTTACCTAATATAATAGGAGTTGTGGATGGTACCTACATTACTATAAAAGCTCCAAAAGAAGATCCAGAAGTTTATGTAACTAGAAAATGTACCTATGCCATTACACTTCAGGCTATATGTGATCCACAATTAAAGTTTACAGACAGTTTTATGGGGTATCCAGGATCAGTAAGTGATAACAGAATATTTAGAAACTCTCGTATTTTTGCAGAAATCCAGAATCATAGGAATACATATGTGACTGGTGATGAATATATCATAGGGGATAAAGCATATCCGCTTTTAGAATGGTGTATTCCTCCATTTATCAATAGGGGGAATATGACTCCATCAAAAATATATTTCAACACCCAACAAGCCAAGACAAGACAGACAATTGAACCAACATTTGCACTACTATTTGGTAGGTTCCGAAGACTAAAATATTTAGACATGAACCGGACTGATCTAATCCCAACAACAGTATTAGCTGCTTGTGTTTTACATAATATATGCCGTGATCCAGAACTAGACAATGGATTTATTGAGGAAGGACTTGCCCACCTTAATGAAAATCGTGCTGAAGATATTTTGGAAATCCAGAACCAGAACGAACTACAAAATATAGAAGATGGTAGAGAAAAAAGGGAAGAGACAACTCTATCTTCAGAGGGATCAAAGAATTCCATTACAATAAATATTTCTAATTAG
- Protein Sequence
- MSGHGKEVKKKSKSKDKVLKRKLFTYSEESLKEALNHIRLGEISIREATRRFRVPRATLQDRLHSRRGDAVQKTGPQPIMGVDGEKIRIAEWAINIAKSGRALITEEIIRAWFRDLNEFLENNNLQEIVKHPQRIFNGDEAGFAFIYWLMLLTYFCRSVGERFNLGKSSLSKCFMRIIKLLNHLAPTIIKWPSQHDRTQIKEAFLRMGSLPNIIGVVDGTYITIKAPKEDPEVYVTRKCTYAITLQAICDPQLKFTDSFMGYPGSVSDNRIFRNSRIFAEIQNHRNTYVTGDEYIIGDKAYPLLEWCIPPFINRGNMTPSKIYFNTQQAKTRQTIEPTFALLFGRFRRLKYLDMNRTDLIPTTVLAACVLHNICRDPELDNGFIEEGLAHLNENRAEDILEIQNQNELQNIEDGREKREETTLSSEGSKNSITINISN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911730;
- 90% Identity
- iTF_00911730;
- 80% Identity
- -