Lcra006981.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- At3g55350
- Assembly
- GCA_947563755.1
- Location
- OX387422.1:66212282-66214332[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-09 4.3e-07 31.1 0.0 1 39 27 66 27 71 0.89
Sequence Information
- Coding Sequence
- ATGTCGGGTCACGGGAAAGAGGTCAAAAAGAAATCCAAATCAAAGGACAAAGTCCTCAAGAGGAAATTATTCACATACTCCGAAGAATCATTGAAGGAAGCTCTTAACCATATCCGATTAGGTGAAATTTCAATAAGAGAGGCTACTAGGCGGTTCAGGGTGCCAAGAGCTACTCTGCAAGATAGATTACATAGCAGACGTGGTGATGCTGTCCAGAAAACGGGTCCACAGCCGATAATGGGTGTCGATGGCGAAAAAATAAGGATAGCAGAATGGGCTATTAACATTGCTAAGTCCGGTTTTCCAATTGAAAAAGACAAAAAAAGGATTTTTGAATTGAAACTTATTTACTGGTTAATGCTGTTAACATATTTTTGTAGATCAGTTGGAGAAAGGTTCAATCTAGGAAAATCGTCCCTGTCGAAGTGCTTTATGAGAATTATCAAGCTTTTAAACCACCTTGCACCAACCATCATAAAATGGCCTTCACAACATGACCGAACACAAATTAAAGAAGCTTTCTTGAGAATGGGGAGTTTACCTAATATAATAGGAGTTGTGGATGGTACCTACATTACTATAAAAGCTCCAAAAGAAGATCCAGAAGTTTATGTAACTAGAAAATGTACCTATGTCATTACACTTCAGGCTATATGTGATCCACAATTAAAGTTTACAGACAGTTTTATGGGGTATCCAGGATCAGTAAGTGATAACAGAATATTTAGAAACTCTCGTATTTTTGCAGAAATCCAGAATCATAGGAATACATATGTGACTGGTGATGAATATATCATAGGGGATAAAGCATATCCGCTTTTAGAATGGTGTATTCCTCCATTTATCAATAGGGGGAATATGACTCCATCAAAAATATATTTCAACACCCAACAAGCCAAGACAAGACAGACAATTGAACGAACATTTGCACTACTATTTGGTAGGTTCCGAAGACTAAAATATTTAGACATGAACCGGACTGATCTAATCCCAACAACAGTATTGGCTGCTTGTGTTTTACATAATATATGCCGTGATCCAGAACTAGACAATGGATTTATTGAGGAAGGACTTGCCCACCTTAATGAAAATCGTGCTGAAGATATTTTGGAAATCCAGAACCAGAACGAACTACAAAATATAGAAGATGGTAGAGAAAAAAGGGAAGAGACAACTCTATCTTCAGAGGGATCAAAGAATTCCATTACAATAAATATTTCTAATTAG
- Protein Sequence
- MSGHGKEVKKKSKSKDKVLKRKLFTYSEESLKEALNHIRLGEISIREATRRFRVPRATLQDRLHSRRGDAVQKTGPQPIMGVDGEKIRIAEWAINIAKSGFPIEKDKKRIFELKLIYWLMLLTYFCRSVGERFNLGKSSLSKCFMRIIKLLNHLAPTIIKWPSQHDRTQIKEAFLRMGSLPNIIGVVDGTYITIKAPKEDPEVYVTRKCTYVITLQAICDPQLKFTDSFMGYPGSVSDNRIFRNSRIFAEIQNHRNTYVTGDEYIIGDKAYPLLEWCIPPFINRGNMTPSKIYFNTQQAKTRQTIERTFALLFGRFRRLKYLDMNRTDLIPTTVLAACVLHNICRDPELDNGFIEEGLAHLNENRAEDILEIQNQNELQNIEDGREKREETTLSSEGSKNSITINISN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911736;
- 90% Identity
- iTF_00911736;
- 80% Identity
- -