Lcap000251.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- stc
- Assembly
- GCA_949126875.1
- Location
- OX421395.1:2910410-2914201[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2 5.8e+04 -4.7 3.4 6 10 341 345 338 345 0.69 2 15 1.6e-05 0.46 12.2 14.9 3 19 385 401 381 401 0.93 3 15 1.2 3.6e+04 -3.4 0.3 5 10 426 431 426 431 0.92 4 15 4.5e-08 0.0013 20.3 15.2 1 18 437 454 437 455 0.98 5 15 0.71 2.1e+04 -2.7 0.8 6 10 485 489 484 489 0.90 6 15 1.9e-09 5.4e-05 24.8 11.2 1 19 495 513 495 513 0.98 7 15 5.1e-06 0.15 13.8 14.5 4 19 560 575 553 575 0.87 8 15 1.1 3.2e+04 -3.3 2.2 5 10 604 609 604 609 0.93 9 15 0.0012 34 6.2 7.1 1 11 615 625 615 627 0.96 10 15 1.3 3.8e+04 -3.5 1.1 4 10 630 636 629 636 0.73 11 15 1.2e-09 3.5e-05 25.3 14.9 1 18 642 659 642 660 0.97 12 15 1.7 4.8e+04 -3.9 1.1 5 10 688 693 688 693 0.83 13 15 0.0051 1.5e+02 4.2 10.8 1 19 699 716 699 716 0.83 14 15 0.00012 3.4 9.4 21.0 1 19 752 771 742 774 0.85 15 15 0.0019 56 5.5 16.5 1 18 781 799 781 800 0.93
Sequence Information
- Coding Sequence
- ATGTCGTTTTACGATAACCAGGAAAATAATTATCCAAGCGGTAGTTTCACACCAACTGCAAGTTATTTCAATAATAGGGATCACAATTCGTTAACAAATCCTCAAAATAGTGCATACTTAAGGAATCTGCCTGTTGATATATCACATTCTACATTGGAACCAACTGCCAGAGAATTTTTTCCAACCTCAAACGCTTCTGAAAGTCATAATGGTGCTGTTAAGAAGAGGtctcaaaataaatttaaggatAAAGAACAAATTAATTGGAGAAACAGGTATGGAAGTGGAAGAACCTTCAACAGTTCTAGACAAAATTACAGTAATACCTCTAGTAGAGATCAGTTTGCTTCTTCCAACTATCAAAAAAATGATACATTGCAAAATATGGAGCTACAGCAGGCTGAACCTCAAAAAAATCTTGTGAAATATcctaatgaaaaatatgaagatCATCCAGCATATGAAGATCAATACAACCAAGAATATGGTGACAATAATTCCTCAGCAGGTCCTTCAAGGAATTTCAGAAATACTAAGAGATATGAAAATTACCAAGAAAAATCTCGAGGCAACTATAATGAAAAGAGCTCAAGAAATTATGATGATAAAAGAAGTAATTACAAAaagcaaaataatttttcttatcaCAGTGAAGAATCTGGTGCTGGTATGAGGAAAACTAACCAGAACCAAAAAAGAAGTTATAGATCACATGACTCTAGAAATAGCCAAAAGTTAAGGGACAATAACGTGTACAGTAACTGGAGAAGAGAAAGCATAGACAAGGTGCCTGTGCCTAATATTGTTAAATCTAGCAAAAAATTGAATGCTGCATCTCAGAGAGAACGGCTCATAGAAATGCTCAATCGTCGGATGCTAGAATGTCTTGTATgctgtgaaaaaataaaacatacagATAAAGTTTGGTCATGTTTATTATGCTGCCATATATTCCATCTCCATTGTGTGGTCGCTTGGGCCAAGTCATCAAAGATAGAAAATGGCTGGAGATGTCCAGCCTGTCAGAATGTCTGTAGTGAAGTACCTAAACAATATAAATGCTATTGTGGTAAAACTATAGAACCTAGatTTGAACCAGGAGTGATTCCCCACGGATGTGGAGATATGTGCTTAAGAAAAGGTCGGCATTGTGAGCACAAATGTTCTATTTTATGTCATCCTGGACCTTGTCCAGATTGTACCATAATGATTTCAAAATATTGTGGCTGTGGAGCTACTCAACAGATGGTAAAGTGTAGCACCGACATAGAAATCACTTGCGACGCCATCTGCAGTAAGTTTTTAGAATGTGGATTGCACCATTGCACACAAACTTGTCATCTGGGTGATTGCCAACCTTGCGATAAGACTATTATACAGGAATGTTATTGTGCCAAAGAAGGAAGAAAGgTACCCTGTTGTGGTGAATTTAAAGGTAAAACTCAGTATTCTTGCAATGAAGTGTGTGATAAGCTTTTATCTTGTGGAAATCACAGATGTAAGAAGTTTTGTCATGAAGGTTCATGTGAAACATGTTCGATGGATATAAACAGTGTCAAAACCTGTCCCTGTGGAAGAACATGTCTCACTAAAGAACGATTATCCTGTTTGGATTCCATTCCATGCTGTGATAAGGTGTGCGgtaaagtttttcaatgtggacAACCAAATGCTCCACATAGATGTGAAAAAAGTTGTCATCAAGGTCCGTGTTCAACTTGTCCATTAACCACTGTAATCAAGTGTCGATGTGGTCATATGGATAAGGAAATACCTTGTTCAGAACTAACCACGAAGGCTGACGATGCACGGTGTCAGAAAAAATGTACAAAGAAACGTTTGTGCGGCAAACATAAATGCAACCAATTCTGTTGCATAGAAATCGAACATGTTTGTCCTCTACCATGCAATCGTCTTCTATCCTGCGGTCAGCACAGATGCGAACGCACATGTCACTCCGGTCGTTGTCCGACCTGCGAAGAAACTAGTTTCGAAGAACTCTACTGCGAATGCGGCGCAAGCGTAATATACCCACCGATACCGTGCGGAACCAAACCACCTAATTGCACCAAACCGTGTTCGAGACCGAGACCATGCGGCCATGACGTAAACCATTCATGTCATACCGGATTCTGTCCACCTTGCACTGTTTTATCTAAACGCTGGTGTTATGGACACCATGAGCAAAGATCAGCTATTCCTTGTCATCAAGAGTATTTCAGTTGTGGTTTACCATGTGGCAAGGAACTGTCTTGCAAGAGGCATAAGTGTGTTAAACCTTGTCATGATGGACCATGTCCTACACCTTGTAAACAACCTTGTACTGTTCCTAGGGAGTTATGCGGACATCCTTGTAGCAGACCATGTCACAAACCGCCATGTCCTGAAAGTAGTTGTAAACAGCTAGTTCCAGTGACTTGTCAGTGTGGATTACAAAAAACTACAAGGCCATGTATAGAAGTCGCggatgaatttaaaaatatccaaatggcTCAGTTGAAAGAAAAAATGGGCAGTTTGTCTTCTAATTCTACGATAGATTTAACAGATATTTTGAACGTACCCAAGAAACCAACGGTTTTGAAAATcTTGGAGTGTACTGAAGAATGCCGGGTTTTAGACAGAAATAGAAGGTTAGCAATTGGTTTACAGATTCGCAATCCAGATTTAAGCCAAAAACTGACTCCGAGATATTCTGACTTTATGCGTCAGTGGGGGAAGAAGGatcatcatttttgtcaaaaagtaCACGACAAATTAACAGAACTGGTCCAACTAGCCAAAAACAGCAAACAGAAGAGTCGCTCCTACTCGTTCGATTCGATGAATAGAGATAAACGGCACTTTATACACGAGTACTGCGAACATTTCGGCGTGGAAAGTGCAGCGTACGATATGGAACCAAATAGAAATATCGTAGCGACGGCAATTAAAGATAAATCTTGGTTACCGAGTATAAGTTTATTGGAATTTATCCAAAGGGAAAATGGACAGCGAAAAGTTCCTGGACCCGTGTTGGGACGCGGTCCTAGTGGTAAAACGGAAACAGTGTCTTTGAAGTTGCCTAGCAGAGTACAAAGGCCAAATACACCACCTAACGATATTGTTGATCCTTTCAGGACATCTTAG
- Protein Sequence
- MSFYDNQENNYPSGSFTPTASYFNNRDHNSLTNPQNSAYLRNLPVDISHSTLEPTAREFFPTSNASESHNGAVKKRSQNKFKDKEQINWRNRYGSGRTFNSSRQNYSNTSSRDQFASSNYQKNDTLQNMELQQAEPQKNLVKYPNEKYEDHPAYEDQYNQEYGDNNSSAGPSRNFRNTKRYENYQEKSRGNYNEKSSRNYDDKRSNYKKQNNFSYHSEESGAGMRKTNQNQKRSYRSHDSRNSQKLRDNNVYSNWRRESIDKVPVPNIVKSSKKLNAASQRERLIEMLNRRMLECLVCCEKIKHTDKVWSCLLCCHIFHLHCVVAWAKSSKIENGWRCPACQNVCSEVPKQYKCYCGKTIEPRFEPGVIPHGCGDMCLRKGRHCEHKCSILCHPGPCPDCTIMISKYCGCGATQQMVKCSTDIEITCDAICSKFLECGLHHCTQTCHLGDCQPCDKTIIQECYCAKEGRKVPCCGEFKGKTQYSCNEVCDKLLSCGNHRCKKFCHEGSCETCSMDINSVKTCPCGRTCLTKERLSCLDSIPCCDKVCGKVFQCGQPNAPHRCEKSCHQGPCSTCPLTTVIKCRCGHMDKEIPCSELTTKADDARCQKKCTKKRLCGKHKCNQFCCIEIEHVCPLPCNRLLSCGQHRCERTCHSGRCPTCEETSFEELYCECGASVIYPPIPCGTKPPNCTKPCSRPRPCGHDVNHSCHTGFCPPCTVLSKRWCYGHHEQRSAIPCHQEYFSCGLPCGKELSCKRHKCVKPCHDGPCPTPCKQPCTVPRELCGHPCSRPCHKPPCPESSCKQLVPVTCQCGLQKTTRPCIEVADEFKNIQMAQLKEKMGSLSSNSTIDLTDILNVPKKPTVLKILECTEECRVLDRNRRLAIGLQIRNPDLSQKLTPRYSDFMRQWGKKDHHFCQKVHDKLTELVQLAKNSKQKSRSYSFDSMNRDKRHFIHEYCEHFGVESAAYDMEPNRNIVATAIKDKSWLPSISLLEFIQRENGQRKVPGPVLGRGPSGKTETVSLKLPSRVQRPNTPPNDIVDPFRTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736296;
- 90% Identity
- iTF_00736296;
- 80% Identity
- -