Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: stc
Assembly: GCA_963978555.1
Location: OZ021705.1:24964041-24968335[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2 4.1e+04 -4.7 3.4 6 10 327 331 324 331 0.69

2 15 1.5e-05 0.32 12.2 14.9 3 19 371 387 367 387 0.93

3 15 0.66 1.4e+04 -2.6 0.5 5 10 412 417 412 417 0.94

4 15 7.3e-08 0.0015 19.7 15.4 1 18 423 440 423 441 0.98

5 15 0.7 1.4e+04 -2.6 0.8 6 10 471 475 470 475 0.90

6 15 1.6e-07 0.0034 18.5 9.3 1 19 481 499 481 499 0.98

7 15 5e-06 0.1 13.8 14.5 4 19 546 561 539 561 0.87

8 15 1.1 2.2e+04 -3.3 2.2 5 10 590 595 590 595 0.93

9 15 0.00031 6.3 8.1 7.8 1 11 601 611 601 613 0.96

10 15 1.3 2.7e+04 -3.5 1.1 4 10 616 622 615 622 0.73

11 15 1.2e-09 2.5e-05 25.4 14.9 1 18 628 645 628 646 0.97

12 15 1.6 3.4e+04 -3.8 1.1 5 10 674 679 674 679 0.83

13 15 0.0016 32 5.8 12.3 1 19 685 702 685 702 0.83

14 15 0.00011 2.2 9.6 20.9 1 19 738 757 728 760 0.85

15 15 0.0019 39 5.6 16.5 1 18 767 785 767 786 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2	4.1e+04	-4.7	3.4	6	10	327	331	324	331	0.69
2	15	1.5e-05	0.32	12.2	14.9	3	19	371	387	367	387	0.93
3	15	0.66	1.4e+04	-2.6	0.5	5	10	412	417	412	417	0.94
4	15	7.3e-08	0.0015	19.7	15.4	1	18	423	440	423	441	0.98
5	15	0.7	1.4e+04	-2.6	0.8	6	10	471	475	470	475	0.90
6	15	1.6e-07	0.0034	18.5	9.3	1	19	481	499	481	499	0.98
7	15	5e-06	0.1	13.8	14.5	4	19	546	561	539	561	0.87
8	15	1.1	2.2e+04	-3.3	2.2	5	10	590	595	590	595	0.93
9	15	0.00031	6.3	8.1	7.8	1	11	601	611	601	613	0.96
10	15	1.3	2.7e+04	-3.5	1.1	4	10	616	622	615	622	0.73
11	15	1.2e-09	2.5e-05	25.4	14.9	1	18	628	645	628	646	0.97
12	15	1.6	3.4e+04	-3.8	1.1	5	10	674	679	674	679	0.83
13	15	0.0016	32	5.8	12.3	1	19	685	702	685	702	0.83
14	15	0.00011	2.2	9.6	20.9	1	19	738	757	728	760	0.85
15	15	0.0019	39	5.6	16.5	1	18	767	785	767	786	0.93

Sequence Information

Coding Sequence: ATGTCGTTTTACGATAACCAGGAAAATAATTATCCAAGCAGTAGTTTTACACCAACTGCAAGTTATTTCAATAATAGGGAACAAAACTCGTTAACAAATCCTCAAAATAGTGCATACTTAAGGAATCTGCCTGTTGATATATCACATTCTACATTGGAACCAACTGCCAGAGAATTTTTTCCAACCTCAAACGCTTCTGAAAGTCATAATGGTGCTGTTAAGAAGAGAtctcaaaataaatttaaggACAAAGAACACAATAATTGGAGAAACAGGTATGGAAGTGGAAGAACTTTCAACAGTTCTAGACAAAATTACAGTAGTACCTCCAGTAGAGATCAGTTTCCTTCTTTCAACTttcaaaaaaatgataaattgcCTAATATGGAGCAACAGCCGGCTCAACCAGATTGTTCAGCATATGAAGACCAATACCAAGATTATGGTGACAATAAGTCCTCAGCAGGTTCTTCGCGGAATTTCAGAAATACTAAGAGATATGAAAATTATCAAGAAAAATCTCGAAGCAACTATAATGAGAAGAGCTCCAGAAATTATGATGATAAAAGAAGTAATTATAAaaagcaaaataatttttcttatcaaaGTGAAGACAATGGTGCTGGTATGAGGAAAACCAACCAGAACCAAAAAAGAAGTTATAGATCACATGACTCTAGAAATAGCCAAAAGTTAATGGACAATAATGTGTACAGTAACTGGAGAAAAGAAAGCATAGAAAAAGAGCCTAGGCCTAATATTGTTAAATCTAGTAAAAAATTAAATGCTGCATCTCAGAGAGAAAGGCTCATAGAAATGCTCAATCGTCGGATGCTAGAATGTCTTGTATGctgtgaaaaaataaaacatacagATAAAGTTTGGTCATGTTTATTATGCTGCCATATATTCCATCTTCATTGTGTGGTTGCTTGGGCCAAGTCATCAAAGATAGAAAACGGCTGGAGGTGTCCAGCCTGTCAGAATGTCTGCAGTGAAGTACCTAATCAATATAAGTGCTATTGTGGTAAAACTATAGAACCTAGatTTGAACCAGGAGTAATTCCTCATGGATGTGGAGATATGTGCTTACGAAAAGGTCGGCATTGTGAACACAAATGTTCTATTTTATGTCATCCGGGACCCTGTCCAGATTGTACcataatgatttcaaaatattgtggttGCGGAGCTACTCAACAGATGGTAAAATGTAGCACCGACATAGAAATCACTTGCGATGCCGTCTGTAATAAGTTGTTAGAATGTGGATTGCACCATTGCACACAAAAATGTCATCTGGGCGATTGCCAACCTTGCGATAAGACTATTATACAGGAATGTTATTGTGCCAAAGAAGGAAGAAAGgtaCCTTGTTGTGGCGAATTTAGAGGCAAAACTCAGTATTCTTGTAACGAAGTGTGTGATAAGCTTTTATCTTGTGGAAATCATAGATGTAAGAAGTTTTGTCATGACAGTTCATGTGAAACATGTTCAATGGATATAAACAGTGTCAAAACATGTCCTTGCGGAAGAACACGTCTCACTAAAGAACGATTATCCTGTTTGGATCCCATTCCCTGCTGTGATAAGGTGTGCGGTAAAGTTTTTCAATGTGGACAACCAAATGCTCCGCATAGATGTGAAAAAAGTTGTCATCAAGGTCCGTGTTCCACTTGTCCATTGACCACTGTTATCAAGTGTCGATGTGGTCATATGGATAAGGAAATACCTTGTTCAGAACTAACCACCAAGGCAGACGATGCTCGGTGTCAGAAAAAATGTACCAAGAAACGTTTGTGCGGCAAACATAAATGCAACCAACTCTGCTGCATAGAAATCGAACACGTCTGCCCACTTCCATGCAATCGTCTTCTATCCTGCGGTCAGCACAGATGCGAACGGACATGTCACTCCGGTCGTTGTCCGACCTGCGAAGAAACTAGCTTCGAAGAACTCTACTGCGAATGCGGCGCAAGCGTAATATACCCACCAGTACCGTGTGGAACGAAACCACCCAATTGTACCAAACCGTGTTCAAGACCGAGACCATGCGGCCACGACGTAAACCATTCGTGTCATACTGGATCCTGTCCTCCTTGCACTGTTTTATCCAAACGTTGGTGTTATGGACACCACGAGCAAAGATCGGCTATTCCTTGTCATCAAGAGTATTTTAGTTGCGGGTTACCGTGCGGTAAGGAACTGTCTTGCAAGAGGCATAAGTGCGTTAAACCTTGTCACGATGGTCCATGTCCTTCGCCTTGTAAACAACCCTGTACTGTTCCTAGGGAGTTGTGCGGACATCCTTGTAGCAGGCCGTGTCACAAACCGCCGTGTCCTGAAAGTAGTTGTAAACATCTCGTTCCAGTGACTTGTCAGTGTGGATTACAAAAAAGTACAAGGCCATGTTTAGAAGTCGCTgacgaatttaaaaatatccaaATGGCTCAGTTGAAAGAAAAAATGGGCAGCTTGTCTACTAGTTCTACGATAGATTTAACTGATATTTTGAATGTACCCAAAAAGCCAACGGTTTTGAAAATCTTGGAGTGCACTGAAGAATGCCGGGTATTAGACAGAAATAGAAGGTTGGCAATCGGTTTACAGATTCGCAATCCAGATTTAAGTCAAAAACTGACTCCGAGATATTCGGACTTTATGCGTCAGTGGGCGAAAAAGGATCATCATTTTTGCCAAAAAGTACATGATAAATTAACGGAATTGGTCCAACTAGCCAAAAACAGCAAACAGAAGAGTCGCTCTTACTCCTTTGATTCGATGAACAGAGACAAACGGCACTTTATACACGAGTACTGCGAACATTTCGGTGTGGAAAGTGCAGCGTACGATATGGAACCGAATAGAAATATCGTAGCGACGGCGATTAAAGATAAATCTTGGTTACCGAGTATAAGTTTATTGGAATTTATACAAAGGGAAAATGGACAGAGGAAAGTTCCTGGACCCGTGTTGGGACGCGGTTCTAGTGGTAAAACGGAAACAGTGTCTTTGAAGTTGCCTAGTAGAGTACAAAGGCCGAATACACCACCCAATGATATTGTTGATCCTTTCAGATCATCATAG
Protein Sequence: MSFYDNQENNYPSSSFTPTASYFNNREQNSLTNPQNSAYLRNLPVDISHSTLEPTAREFFPTSNASESHNGAVKKRSQNKFKDKEHNNWRNRYGSGRTFNSSRQNYSSTSSRDQFPSFNFQKNDKLPNMEQQPAQPDCSAYEDQYQDYGDNKSSAGSSRNFRNTKRYENYQEKSRSNYNEKSSRNYDDKRSNYKKQNNFSYQSEDNGAGMRKTNQNQKRSYRSHDSRNSQKLMDNNVYSNWRKESIEKEPRPNIVKSSKKLNAASQRERLIEMLNRRMLECLVCCEKIKHTDKVWSCLLCCHIFHLHCVVAWAKSSKIENGWRCPACQNVCSEVPNQYKCYCGKTIEPRFEPGVIPHGCGDMCLRKGRHCEHKCSILCHPGPCPDCTIMISKYCGCGATQQMVKCSTDIEITCDAVCNKLLECGLHHCTQKCHLGDCQPCDKTIIQECYCAKEGRKVPCCGEFRGKTQYSCNEVCDKLLSCGNHRCKKFCHDSSCETCSMDINSVKTCPCGRTRLTKERLSCLDPIPCCDKVCGKVFQCGQPNAPHRCEKSCHQGPCSTCPLTTVIKCRCGHMDKEIPCSELTTKADDARCQKKCTKKRLCGKHKCNQLCCIEIEHVCPLPCNRLLSCGQHRCERTCHSGRCPTCEETSFEELYCECGASVIYPPVPCGTKPPNCTKPCSRPRPCGHDVNHSCHTGSCPPCTVLSKRWCYGHHEQRSAIPCHQEYFSCGLPCGKELSCKRHKCVKPCHDGPCPSPCKQPCTVPRELCGHPCSRPCHKPPCPESSCKHLVPVTCQCGLQKSTRPCLEVADEFKNIQMAQLKEKMGSLSTSSTIDLTDILNVPKKPTVLKILECTEECRVLDRNRRLAIGLQIRNPDLSQKLTPRYSDFMRQWAKKDHHFCQKVHDKLTELVQLAKNSKQKSRSYSFDSMNRDKRHFIHEYCEHFGVESAAYDMEPNRNIVATAIKDKSWLPSISLLEFIQRENGQRKVPGPVLGRGSSGKTETVSLKLPSRVQRPNTPPNDIVDPFRSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00911574;
90% Identity: iTF_00911574;
80% Identity: -