Lcap033137.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421405.1:10178757-10180832[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.012 3.4e+02 3.1 0.1 14 45 11 43 7 50 0.74 2 22 0.013 3.9e+02 2.9 0.2 21 44 47 70 42 73 0.88 3 22 0.00035 10 8.0 0.6 16 46 71 100 67 107 0.81 4 22 0.059 1.7e+03 0.8 0.1 21 44 103 126 99 136 0.79 5 22 0.13 3.9e+03 -0.3 0.0 21 33 131 143 125 158 0.71 6 22 0.016 4.5e+02 2.7 0.0 21 45 159 183 147 190 0.85 7 22 0.0057 1.6e+02 4.1 0.1 21 52 187 217 183 219 0.85 8 22 0.033 9.5e+02 1.7 0.1 18 44 211 237 205 245 0.74 9 22 0.0058 1.7e+02 4.1 0.0 21 44 242 265 236 272 0.89 10 22 0.017 4.9e+02 2.6 0.2 21 44 298 321 290 330 0.80 11 22 0.17 5.1e+03 -0.7 0.0 21 44 326 349 319 359 0.72 12 22 0.057 1.7e+03 0.9 0.0 20 45 353 378 338 384 0.77 13 22 0.022 6.4e+02 2.2 0.1 20 44 380 404 374 413 0.82 14 22 0.048 1.4e+03 1.1 0.0 21 44 409 432 399 437 0.76 15 22 0.073 2.1e+03 0.6 0.0 26 50 440 464 435 468 0.80 16 22 0.00021 6 8.7 0.0 21 47 491 516 485 522 0.77 17 22 0.0013 38 6.2 0.1 18 46 516 544 515 550 0.85 18 22 0.011 3.2e+02 3.2 0.1 18 44 543 569 542 577 0.84 19 22 0.011 3.3e+02 3.1 0.0 21 46 574 599 567 605 0.80 20 22 0.0017 49 5.8 0.0 21 46 602 627 594 633 0.82 21 22 0.0019 56 5.6 0.1 21 46 630 655 626 661 0.86 22 22 0.0014 39 6.1 0.1 21 45 658 682 654 685 0.90
Sequence Information
- Coding Sequence
- ATGGAATCGTTCGGTTTGAAAGGAACTTTGAAAAGACATTTGCGTTGTCACACTGGAGAAAAACCGTTCAAGTGTGATATTTGCTTGAAAGCATTTCCAGAGAAATGTAATTTGAATATACATATGCGTTGTCACACTGGcgaaaaaccatttaaatgcGAGATTTGTTTACAATCGTTCAGAGAGAGAAGTGTATTAAACAAACACATTCGATCTCACAGTAGCGAAAAACCGTATAAATGCGAAATTTGTACGAGATCGTACACTTTAAAGGACTCTTTAAGAAGACATATGCGTTGTCATACTGGagaaaaaccatttaaatgcgaaatttgttcaaaatcgtTTAGAGAAAGAAGTATTTTGAATTTACACATTCGTTCTCACACTGGCGAAAAACCGTATAAATGCGAAATATGTAAGGAATCGTTCGGATTTAAAGGAactttaaaaatgcatttactTTGTCATACCggagaaaaaccattcaaatgtgaaatttgtttgaaaacgTTTAGAGTTAAAAGTACTTTGAACACACACATTCGTACTCATACCGGCGAAAAACCGTATAAATGCGAAATTTGTTTGGAATCTTTCAGATTGgaaaaaacttttgaaaagcACTTCCGTCGTCATACTGAAAAACCgttaaaatgtgaaatttgcgcGAAATCGTTTGTAGAGAAATGTACTTTGAATATACACCTGCGTTGTCACGCTGGCGAAAAACCATTTAATTGcgatatttgtttaaaatcatTCAGAGACAGAAGTACTTTGAATAAACACATTCGATCGCACAGTGGCGAAAAACTGTATAAATGCGAAACTTGTACGAGATCGTACACTTTGAAGGACTCTTTAAGAAGGCATAAGCGTTGTCATACTGGagaaaaaccatttaaatgcGAAATTTGCTTGAAATCGTTTAGGGAGAGAAACATTTTGAACTCGCATATTCGTTCTCACACCGGTGAAAAACCGTATAAATGCGAAGTATGTATGAAATCGTTCGGATTTAAAGGAACTTTAAAGATACATTTACGTTGTCATACTGGAGAAAAACCGTTCAAATGTGAACTTTGTTTGAAATCGTTCACTATTAAAGACGCTTTAAAAAAACACTTGAGTTGTCATACTGAAAAACcgttcaaatgtgaaatttgtttaaaaccgTTTAGAGAGGAAATAACTTTGAACACACACATTCGTTCTCACACTGGCGAAAAACCGTATAAATGCGAAATTTGTATGGAAACGTTCGATTTGCAAGAAAGTTTTAAAAAGCACTTGCCTTGTGTTGAAAAACTGTTCAAATGCGAAATTTGTATGAAGTCGTACACGTTGAAAGACTCATTAAAAAGACACCTACGCTTTCATACTGGAGAAAAACCGTTCAAATgcgaattttgtttaaaatcgtTTATAGAGAAAAGTATTTTGAGTATACACATTCGTTCTCATACTGGCGAAAAACCGTTTAAATGCCCAATTTGTATGGAATCCTTCAGTTTAAAAGGAACTTTGAATCGACATTTACGTCGTCACACTGGAGAAAAACcgttcaaatgtgaaatttgcttgAAATCGTTCACTGCAAAAGACGCTTTAAAACGACACTTGCGTTGTCACACTGAAAAACCGTTTAAATGTGAAATCTGTTTGAAACCGTTTAGAGAGGAAATAACTTTGAACACACACATTCGTTCTCATACTGGCGAAAAACCATACAAATGCGAAATTTGTATGGAATCGTTCGGTTTGAAAGAGAGTTTGAAAAAACACTTGCGTTGTCATTCTGGAGAAAAGCcgttcaaatgtgaaatttgttttaaatcgtTTACAGAGAACGGTATTCTAAAAAGACACATCCGTTGTCACACTGGAGAAAAACCGTTCAAATGTGAAATATGTACGAAGCCTTTCAGGATAAAAGAAACTTTAAAAAGACACATGCGGTGTCATACCGGCGAAAAACCgtataaatgtgaaatttgtttgaaatcgtTTAGAGAGAAAGGCAAATTGAATAGACACATGCGTTGTCACACTGATGGCAATAAACAACCATGA
- Protein Sequence
- MESFGLKGTLKRHLRCHTGEKPFKCDICLKAFPEKCNLNIHMRCHTGEKPFKCEICLQSFRERSVLNKHIRSHSSEKPYKCEICTRSYTLKDSLRRHMRCHTGEKPFKCEICSKSFRERSILNLHIRSHTGEKPYKCEICKESFGFKGTLKMHLLCHTGEKPFKCEICLKTFRVKSTLNTHIRTHTGEKPYKCEICLESFRLEKTFEKHFRRHTEKPLKCEICAKSFVEKCTLNIHLRCHAGEKPFNCDICLKSFRDRSTLNKHIRSHSGEKLYKCETCTRSYTLKDSLRRHKRCHTGEKPFKCEICLKSFRERNILNSHIRSHTGEKPYKCEVCMKSFGFKGTLKIHLRCHTGEKPFKCELCLKSFTIKDALKKHLSCHTEKPFKCEICLKPFREEITLNTHIRSHTGEKPYKCEICMETFDLQESFKKHLPCVEKLFKCEICMKSYTLKDSLKRHLRFHTGEKPFKCEFCLKSFIEKSILSIHIRSHTGEKPFKCPICMESFSLKGTLNRHLRRHTGEKPFKCEICLKSFTAKDALKRHLRCHTEKPFKCEICLKPFREEITLNTHIRSHTGEKPYKCEICMESFGLKESLKKHLRCHSGEKPFKCEICFKSFTENGILKRHIRCHTGEKPFKCEICTKPFRIKETLKRHMRCHTGEKPYKCEICLKSFREKGKLNRHMRCHTDGNKQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911286;
- 90% Identity
- iTF_00911286;
- 80% Identity
- iTF_00911286;